Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B16
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)             180   1e-45
SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  

>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score =  180 bits (438), Expect = 1e-45
 Identities = 80/132 (60%), Positives = 106/132 (80%)
 Frame = +3

Query: 408 MRLDKGVMQEIVGAFPAIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVE 587
           M + K ++ E++GAFP IDEAMS+AEVM+LV  M+FS V+FDTAPTGHTLRLLSFP V+E
Sbjct: 2   MSMGKAMISELLGAFPGIDEAMSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIE 61

Query: 588 RGLGKLMRLKSKVAPXINQIASLFGLADFNSDMXSNKMDEMLSVIXQVNAQLKDPNQTTF 767
           + LGK++ LK+ ++P I+Q  SL G+ D N+D  ++K++E L VI QV+AQ K+P+ TTF
Sbjct: 62  KSLGKILSLKNSISPFISQFGSLLGMQDLNADQMTSKLEETLPVIKQVSAQFKNPDHTTF 121

Query: 768 VCVCIAXFLSLY 803
           VCVCIA FLSLY
Sbjct: 122 VCVCIAEFLSLY 133


>SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 328 LSNPLTFVGTLXNFWSNASEILWAGSXDMINTDSRTFDS 212
           +SN L   GT    +  A E +WAG  ++I+ +S+TF S
Sbjct: 28  VSNNLELNGTAELIFHEAKERVWAGLSNVIDFNSKTFFS 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,717,450
Number of Sequences: 59808
Number of extensions: 370188
Number of successful extensions: 757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)