Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B16
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...   241   5e-64
U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical pr...    87   2e-17
U64854-4|AAB18314.1|  308|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical...    29   5.1  
AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinas...    28   6.8  
AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinas...    28   6.8  
AC006712-11|AAK39327.2|  308|Caenorhabditis elegans Hypothetical...    28   9.0  

>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score =  241 bits (589), Expect = 5e-64
 Identities = 122/243 (50%), Positives = 155/243 (63%), Gaps = 10/243 (4%)
 Frame = +3

Query: 105 QPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISXDPAHNISDAFD 284
           + S+KN+++QK+L+WIF           CSCSLA QLSKVRE VL+IS DPAHNISDAF 
Sbjct: 6   EASIKNILEQKTLKWIFVGGKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHNISDAFS 65

Query: 285 QKFXKVPTKVKGFDNLFAMEIDPN-----VGLTXLPE-----EYFEGESEAMRLDKGVMQ 434
           QKF K PT V+GF NLFAMEID N     V +  + E        EG S    + K  +Q
Sbjct: 66  QKFTKTPTLVEGFKNLFAMEIDSNPNGEGVEMGNIEEMLQNAAQNEGGSGGFSMGKDFLQ 125

Query: 435 EIVGAFPAIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRL 614
              G  P IDEAMS+ E++KL+  ++F  VVFDTAPTGHTLRLL FP ++E+   K++ L
Sbjct: 126 SFAGGLPGIDEAMSFGEMIKLIDSLDFDVVVFDTAPTGHTLRLLQFPTLLEKVFTKILSL 185

Query: 615 KSKVAPXINQIASLFGLADFNSDMXSNKMDEMLSVIXQVNAQLKDPNQTTFVCVCIAXFL 794
           +    P +NQ   +FG+   + +    KM   L  + ++NAQ KDPN TTFVCVCIA FL
Sbjct: 186 QGMFGPMMNQFGGMFGMGGGSMNEMIEKMTTTLESVKKMNAQFKDPNCTTFVCVCIAEFL 245

Query: 795 SLY 803
           SLY
Sbjct: 246 SLY 248


>U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical
           protein F47G3.2 protein.
          Length = 192

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 40/102 (39%), Positives = 61/102 (59%)
 Frame = +3

Query: 486 VMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPXINQIASLFGL 665
           +++L+  + F  VVFDTA TGHTLRLL FP +V+    K++ L+  + P +N I  +F +
Sbjct: 1   MIELIDSLGFDVVVFDTASTGHTLRLLQFPTIVDNFFTKILSLQGMLEPMLNNIGGMFEM 60

Query: 666 ADFNSDMXSNKMDEMLSVIXQVNAQLKDPNQTTFVCVCIAXF 791
            D   +     M   +  + ++NAQ KD N T FVC+C+A F
Sbjct: 61  ED--DETLETMMTAAVKDLERMNAQFKDLNCTLFVCICMADF 100


>U64854-4|AAB18314.1|  308|Caenorhabditis elegans Hypothetical
           protein K11C4.1 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 145 GGFSLEGKAELGKLRAVAVSQFS-CRKFAN 231
           G F L G+AELG+LR + V  F  CRKF +
Sbjct: 144 GNFCL-GRAELGELRKIFVLDFGLCRKFVD 172


>AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical
           protein Y51H7C.12 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 292 NFWSNASEILWAGSXDMINTDSR 224
           +FWS   + LW GS D +  +SR
Sbjct: 349 DFWSMHQDTLWTGSFDQLELESR 371


>AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinase
           protein 32, isoformb protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 482 SIAHSLINSRESSNNLLHDTLVQSHSLRFSFK 387
           S +HS + +  +SN  LH T   + SLRF  K
Sbjct: 630 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 661


>AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinase
           protein 32, isoforma protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 482 SIAHSLINSRESSNNLLHDTLVQSHSLRFSFK 387
           S +HS + +  +SN  LH T   + SLRF  K
Sbjct: 699 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 730


>AC006712-11|AAK39327.2|  308|Caenorhabditis elegans Hypothetical
           protein Y119C1B.10 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 617 VKGCPLHQSNCVTVWTSRFQLGHVQQQNG*DVISYXTSECTAQRPESNYI 766
           V+GCPLH   C +V    F+   +   N      +   +   Q PE   +
Sbjct: 81  VQGCPLHSIRCTSVGNENFRKDIIHVANNSYFHYFLVGKGVYQEPEEGSV 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,174
Number of Sequences: 27780
Number of extensions: 275492
Number of successful extensions: 597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)