Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B15
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0062 - 7917596-7918129,7918279-7918447,7919007-7919182,791...    29   3.4  

>05_03_0062 -
           7917596-7918129,7918279-7918447,7919007-7919182,
           7919235-7919360,7920196-7920342
          Length = 383

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 181 HCVRGPMSVTAHYNNLNLFHVRLLLFVYLKRLPFTSHTVISEEDFLL 41
           HC      V A +  +NL H+RL L  Y   L    H +  +ED +L
Sbjct: 248 HCFFKCKYVKAGWRVMNLKHIRLELMQYSSALDVCKHILNMKEDKML 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,011
Number of Sequences: 37544
Number of extensions: 266728
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)