Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B15
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.69 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.5  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 163 WAPVHSASLLPVYCQ 207
           WAP H+  LL VY Q
Sbjct: 298 WAPFHAQRLLAVYAQ 312


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 163 WAPVHSASLLPVYCQ 207
           WAP H+  LL VY Q
Sbjct: 283 WAPFHTQRLLYVYAQ 297


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 435 TRESIDFVVNCLHH 476
           T ES+D + N LHH
Sbjct: 459 TEESVDALCNTLHH 472


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 296 HPGFGTRWQRARKFF 340
           HPGF  +  RAR+ F
Sbjct: 199 HPGFADKEYRARRKF 213


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 357 MGNPLKKNFLALCQRVPNPG*YLQASFLIHGSLSPF 250
           +G+P+         R P+   +    F+I+ SLS F
Sbjct: 317 IGSPIVLGLNNTPDRTPDQCLFYNTDFIIYSSLSSF 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,836
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)