Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B14
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 35 0.016
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 29 0.61
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.9
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 4.3
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 27 4.3
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 5.7
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 26 7.5
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 25 9.9
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 9.9
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 34.7 bits (76), Expect = 0.016
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +2
Query: 314 APHVRKTSSSAPLQT--FWLPSRTCLVKSTHSSLSKAAPQRKAALVLS*RTEKSSRNSGT 487
A + +SSS+PL + F P+ + + S SS S+ + A+L S +S +S +
Sbjct: 54 ATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS 113
Query: 488 LSRSRMRPL*TNPRNSLSTKPGRSGNSSRE-KYPTTVPSGG*IKTPPSRTLEASRSSAKR 664
+ S ++ +SL SG SS + ++VPS S T SSA
Sbjct: 114 PTSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSSASI 173
Query: 665 VLAT 676
V +T
Sbjct: 174 VSST 177
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 29.5 bits (63), Expect = 0.61
Identities = 29/98 (29%), Positives = 42/98 (42%)
Frame = +2
Query: 335 SSSAPLQTFWLPSRTCLVKSTHSSLSKAAPQRKAALVLS*RTEKSSRNSGTLSRSRMRPL 514
S + P+Q L K T SLS Q ++ L+ R +S +G+L++ PL
Sbjct: 101 SITDPVQAAVLALSVAYAKPTSVSLSPTDLQAQSKLIEKPRRRSASNATGSLNKKNQDPL 160
Query: 515 *TNPRNSLSTKPGRSGNSSREKYPTTVPSGG*IKTPPS 628
R S+S G + PT PS K+PPS
Sbjct: 161 ---RRFSISESAGAAA-------PTPSPSNS--KSPPS 186
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.9
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +2
Query: 332 TSSSAPLQTFWLPSRTCLVKSTHSSLSKAAPQRKAALVLS*RTEKSSRNSGTLSRSRMRP 511
T +S+ L T +PS + ST SSLS ++ A+ SS +S +S S
Sbjct: 229 TLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTAS--------SSSSSSSIISSSSSSS 280
Query: 512 L*TNPRNSLST-KPGRSGNSSREKYPTTVPSGG*IKTPPSRTLEASRSSA 658
++P ++ ST S +SS +T+ S + S TL +S S+
Sbjct: 281 --SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSS 328
Score = 27.1 bits (57), Expect = 3.2
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +2
Query: 332 TSSSAPLQTFWLPSRTCLVKSTHSSLSKAAPQRKAALVLS*RTEKSSRNSG-TLSRSRMR 508
+SSS P + S KS+ SS S +AP A S + SS +S +LS +
Sbjct: 388 SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447
Query: 509 PL*TNPRNSLSTKPGRSGNSSREKYPT--TVPSG 604
P+ T +SL T + S T TV SG
Sbjct: 448 PILTASSSSLLTSSSHTYERSTVYVVTVETVSSG 481
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = +2
Query: 200 YWQ--SKPTPRTLXMSRICP 253
YW S+P PRT+ S++CP
Sbjct: 443 YWNFPSEPFPRTMSFSKMCP 462
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 368 PSRTCLVKSTHSSLSKAAPQRKAALVLS*RTEKSSRNSGTLSRSRMRPL 514
P+ + S L+ AAP VLS R R G+LS +R +P+
Sbjct: 164 PTGDYTAEENESCLNNAAPGSPEVAVLSFRHSFHGRLFGSLSTTRSKPV 212
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 478 FGDVESFKNAAALDKSKEFTFHQAGTFGK 564
F + +SF NA+A SKE G F K
Sbjct: 990 FNEEDSFNNASAAHSSKESDIPSGGVFTK 1018
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 546 SRDVRETHRGKNTRQRSLLVDESKLPLQEHWRLREVQQSE 665
S DV+E ++ + + SL D+ K +E +LRE + E
Sbjct: 143 SNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLREAYEEE 182
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 172 VASFLCRYPQPHHTDNHNTLNCPQDGTTLRFGNI 71
+ LC P H +DN + +C D TT N+
Sbjct: 327 IGDLLCISPINHSSDNLSDYSCVSDTTTEILSNL 360
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/82 (17%), Positives = 32/82 (39%)
Frame = +1
Query: 343 SSPTDVLAAIKNLPGEVHTQQSFEGCSTEKGCAGIKLKDGKVVEKFGDVESFKNAAALDK 522
+SP DV+ N+P H + + S ++ + LK + + + F + +
Sbjct: 304 TSPQDVIPINGNIPDPAHVKDNVRAASIQRSLEYMGLKPNTSIVSYPIDKVFIGSCTNSR 363
Query: 523 SKEFTFHQAGTFGKLIEGKIPD 588
++ A G+ + + D
Sbjct: 364 IEDLRLAAAVVKGRKVAANVKD 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,005
Number of Sequences: 5004
Number of extensions: 74880
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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