Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B14
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 30 2.0
09_06_0073 + 20687057-20687246,20689004-20689203,20689786-206899... 29 3.4
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 29 3.4
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926... 29 4.5
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593... 29 4.5
01_01_1064 + 8393519-8394475 29 4.5
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 29 6.0
06_03_0871 - 25562767-25563509,25563889-25565776 29 6.0
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 29 6.0
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218... 29 6.0
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140... 29 6.0
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 28 7.9
>01_03_0260 -
14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 332 TSSSAPLQTFWLPSRTCLVKSTHSSLSKAAPQRKAALVLS 451
+SS+AP +WL SRTC V + S S + A L LS
Sbjct: 6 SSSAAPAPPWWLTSRTCDVLPSASPSSSGFAEWAAFLFLS 45
>09_06_0073 +
20687057-20687246,20689004-20689203,20689786-20689926,
20689995-20690075,20690564-20690688,20690763-20690807,
20691853-20691877,20692282-20693073
Length = 532
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 172 LFYIVVTCLILAIKAHPE-NIEXVKDLPQANEPVLEAEESEPQARIERCT 318
L+Y+VV C +LA+ HP + V + A LEA PQ R+ + T
Sbjct: 127 LYYVVVPCAVLALLIHPSTSHNIVNRISWAFCVYLEAVSVLPQLRLMQNT 176
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 278 PKKANLKRG*NVAPHVRKTSSSAPLQTFWLPSRTC-LVKSTHSSLSKAAPQR 430
P +A G +V P KT+SS+P T + TC +V ++ SLS+ + ++
Sbjct: 390 PSRAGSGLGRSVTPATPKTASSSPSSTSIVVPETCPVVPASPKSLSRTSSKQ 441
>07_03_0025 +
12587868-12588429,12591820-12592031,12592212-12592603,
12592608-12592965
Length = 507
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 199 ILAIKAHPENIEXVKDLPQANEPVLEAEESEPQA 300
+ A+ PEN+E V +LP + +P + S P++
Sbjct: 260 LAAVPGSPENLEPVDELPGSTKPGVRPNPSRPRS 293
>04_04_0432 +
25157722-25157950,25158045-25158659,25159298-25159380,
25159906-25159979,25160101-25160151,25160295-25160371,
25160856-25161595
Length = 622
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 702 IDSTTRGAGVARTRFAELLEASSVLEGGVLI-HPPEGTVVGYF 577
+DS+T G A R E A++ GGV++ H +G V GY+
Sbjct: 413 LDSSTLPVGGAARRLKEAEVAAAAAGGGVIVSHLADGGVGGYY 455
>01_01_1064 + 8393519-8394475
Length = 318
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 185 W*PA*YWQSKPTPRTLXMSRICPKPMSQYLRPKKANLKRG*NVAPHVRKTSSSAP 349
W P+ W S + +T ++ CP P L+P + + + AP R+ ++S P
Sbjct: 236 WPPS-IWPSSRSKKTATLALPCPCPCPPSLQPARRSTSSERSSAPPPRRRATSLP 289
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 502 NAAALDKSKEFTFHQAGTFGKLIEGKIP 585
+A ALD +K+F+F A T GK +E K+P
Sbjct: 244 DAGALDCAKKFSFEPANTTGK-VELKVP 270
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -2
Query: 819 GRLKCRRLEVXGRAVQQHRRQQSQHPA*RSHRSGMVPGQIDSTTRGAGVARTRFAELLEA 640
G LK R + GR+ QH ++ HP H++ P + G LL+A
Sbjct: 486 GDLKKRSMSFIGRSTPQHHSKKHDHP---HHQAAAAPPAPATLVTVDGDGELEMETLLKA 542
Query: 639 SSVLEG 622
S+ + G
Sbjct: 543 SAYILG 548
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 467 SSRNSGTLSRSRMRPL*TNPRNSLSTKPGRSGNSSREKYPTTVPSGG*IKTPPSRTLEAS 646
SS TLSR R P T P + + R +S+ + P TP S
Sbjct: 133 SSATKATLSRPRTTPRTTTPSPAGAAASPRLSSSNPDARRRAPPQPEPPSTPRKENRVPS 192
Query: 647 RSSAKRVLATPAPRV 691
++A AT PR+
Sbjct: 193 AAAASTAAATATPRL 207
>03_05_0415 -
24019330-24019539,24020948-24021099,24021765-24021846,
24021930-24022068,24022775-24023127
Length = 311
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 530 NSLSTKPGRSGNSSREKYPTTVPSGG*IKTPPSRTLEASRSSAKRVLATPAPRVVESIW 706
N + P G R ++P +P GG ++ EA+ ++A T PR E W
Sbjct: 16 NPTLSPPSSGGRRPRLRFPLPLPRGGHLRCSAGYR-EAAAAAASTSSTTTTPRPTEIPW 73
>02_01_0211 -
1406098-1406227,1406581-1406714,1407241-1407380,
1407639-1407829,1408853-1409346
Length = 362
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 462 SVLQLNTSAAFLCGAAFERLLCVDFT-RQVLDGSQNVCRGAELEVLRTCGATFYPR 298
S++ +TSA FLCG AF R D + ++ L+G+ G L + +PR
Sbjct: 262 SIIAADTSA-FLCGRAFGRTPLTDISPKKTLEGALAGLTGCVLTTVLLSSVLHWPR 316
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 272 LRPKKANLKRG*NVAPHVRKTSSSAPLQTFWLPSRTCLVKSTHSSLSKAAP 424
LRP A + A HV SS T +P L H SLS +AP
Sbjct: 80 LRPHLAGTEANARAAEHVVSALSSLSFPTRVVPYSVLLAYPVHRSLSLSAP 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,846,327
Number of Sequences: 37544
Number of extensions: 558616
Number of successful extensions: 1594
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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