Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B14
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5549| Best HMM Match : PT (HMM E-Value=1.9)                         38   0.013
SB_51099| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)                      30   2.0  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       30   2.0  
SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)                     29   4.6  
SB_19944| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)               29   6.1  
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_12064| Best HMM Match : TIL (HMM E-Value=3.5)                       29   6.1  
SB_4601| Best HMM Match : TIL (HMM E-Value=1.1)                        29   6.1  
SB_59623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)                  28   8.0  
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)        28   8.0  
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)                       28   8.0  

>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
          Length = 282

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 37/124 (29%), Positives = 54/124 (43%)
 Frame = +2

Query: 326 RKTSSSAPLQTFWLPSRTCLVKSTHSSLSKAAPQRKAALVLS*RTEKSSRNSGTLSRSRM 505
           RKTSS   L+T     R    K+T  +  K +  RK +L  S +T  ++    +   S  
Sbjct: 17  RKTSSKTSLKTSPKTRRKKSPKTTPKTSLKTS--RKTSLKTSRKTSLNASRKTSRKTSLK 74

Query: 506 RPL*TNPRNSLSTKPGRSGNSSREKYPTTVPSGG*IKTPPSRTLEASRSSAKRVLATPAP 685
           R L TNP+ S  T P  S  +S +K P   P     +    R  +A R + ++V   P  
Sbjct: 75  RSLKTNPKTSPKTSPKISLKTSLKKSPKISPKQA--RRQVER--QAGRQAGRQVRRLPED 130

Query: 686 RVVE 697
           R  E
Sbjct: 131 RPEE 134


>SB_51099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = +1

Query: 400 QQSFEGCSTEKGCAGIKLKDGKVVEKFGDVESFKNAAALDKSKEFTFHQAGTFGKLIEGK 579
           Q +     T + C    L DG V   FG         A  +S  FTF + G     + G+
Sbjct: 4   QSTVLAVETREACESKGLIDGCVSSAFGSGREEPVQGAFCRSSRFTFERRGKEKGSVRGR 63

Query: 580 IPDN 591
           + DN
Sbjct: 64  LRDN 67


>SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)
          Length = 672

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 470 SRNSGTLSRSRMRPL*TNPRNSLSTKPGRSGNSSREKYPTTVP 598
           SR+ G+ +R + R   +  R   S  P R GNS+ E  P+T P
Sbjct: 514 SRDFGSFTRPKPRRSKSPVRRPRSVSPSRLGNSTVEPLPSTEP 556


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
 Frame = +1

Query: 202 LAIKAHPENIEXVKDLPQANEPVLEAEESEPQARIERCTTC-TQNLKLSSPTDVLAAIKN 378
           LA+   P  IE V    +A    L + E   + R+  C     QN KL          KN
Sbjct: 675 LALNVKPAVIERVSRCTKAE--TLRSMEQLSRPRLGSCQLFRVQNFKL----------KN 722

Query: 379 LPGEVHTQQSFEGCSTEKGCAGIKLKDGK--VVEKFGDVESFKNAAALDKSKEFTF 540
             GE  T    EGC TE GC  + L+ G   V+ K   +  F    A ++  E  F
Sbjct: 723 --GETKTLMYLEGCPTELGCT-VTLRGGNSFVLTKIKKIMQFLIYVAYNQKLEIAF 775


>SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)
          Length = 1020

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 198 DTGNQSPPREH*XCQGSAPSQ*AST*GRRKRTSSEDRTLHHMYAKPQAQLPYRR 359
           DTG  S P +    Q   P+Q     G  KR  S+     H  A+ +A  PYR+
Sbjct: 504 DTGQPSDPCQRTADQNPYPTQRDPYPGAGKRPCSDAGCHRHSMARHEAWAPYRQ 557


>SB_19944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +1

Query: 400 QQSFEGCSTEKGCAGIKLKDGKVVEKFGDVESFKNAAALDKSKEFTFHQAGTFGKLIEGK 579
           Q +     T + C    L +G V   FG         A  +S  FTF + G     + G+
Sbjct: 4   QSTVLAVETREACVSKGLIEGCVSSAFGSGREEPVQGAFCRSSRFTFERRGKEKGSVRGR 63

Query: 580 IPDN 591
           + DN
Sbjct: 64  LRDN 67


>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
          Length = 882

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 407 LSKAAPQRKAALVLS*RTEKSSRNSGTLSRSRMRP 511
           L + AP++   L  S RT +S+RN+  LS  R+ P
Sbjct: 140 LVEKAPEKSVRLFYSLRTARSNRNTTLLSDRRVEP 174


>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1800

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +1

Query: 334  LKLSSPTDVLAAIKNLPGEVHTQQSFEGCSTEKGCAGIKLKDGKVVEKFGDVESFKNAAA 513
            LKL + TD   A+ + P  VH  +     +    C G  LK   V  + G         A
Sbjct: 802  LKLFTVTDHKTAVAHGPLTVHLDRKGVASANVHNCMGSFLKISGVRLREGQT---LTPTA 858

Query: 514  LDKSKEFTFHQAGTFGKLIE 573
            + K    TFH++G  G+ +E
Sbjct: 859  IRKMWATTFHESGEDGRSME 878


>SB_12064| Best HMM Match : TIL (HMM E-Value=3.5)
          Length = 122

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +1

Query: 400 QQSFEGCSTEKGCAGIKLKDGKVVEKFGDVESFKNAAALDKSKEFTFHQAGTFGKLIEGK 579
           Q +     T + C    L +G V   FG         A  +S  FTF + G     + G+
Sbjct: 31  QSTVLAVETREACVSKGLIEGCVSSAFGPGREEPVQGAFCRSSRFTFERRGKEKGSVRGR 90

Query: 580 IPDN 591
           + DN
Sbjct: 91  LRDN 94


>SB_4601| Best HMM Match : TIL (HMM E-Value=1.1)
          Length = 122

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +1

Query: 400 QQSFEGCSTEKGCAGIKLKDGKVVEKFGDVESFKNAAALDKSKEFTFHQAGTFGKLIEGK 579
           Q +     T + C    L +G V   FG         A  +S  FTF + G     + G+
Sbjct: 31  QSTVLAVETREACESKGLIEGCVSSAFGSGREEPVQGAFCRSSRFTFERRGKEKGSVRGR 90

Query: 580 IPDN 591
           + DN
Sbjct: 91  LRDN 94


>SB_59623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +1

Query: 97  RLVDSLVCCDYQCGVVADN-DIKMKPLFYI---VVTCLIL 204
           R  +   CC Y    V  + +IK KPLFYI   VV C+I+
Sbjct: 27  RNAEKYSCCKYPLTDVTFHINIKRKPLFYIFNLVVPCMII 66


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 424 TEKGCAGIKLKDGKVVEKFGDVESFKNAAALDKSKEFTFHQAGTFGKLIEGKIPDN 591
           T + C    L +G V   FG         AL +S  FTF + G       G++ DN
Sbjct: 36  TREACISKGLTEGCVSSAFGSGREEPVQGALCRSSRFTFERRGKEKGSDRGRLRDN 91


>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
          Length = 808

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 518 TNPRNSLSTKPGRSGNSSREKYPTTVPSGG*IKTPPSRTLEASRSSAKRVLATPAPRVVE 697
           T PR+ LS       ++  +  PT +P+   +++ P+  L AS     +  A PA  +V+
Sbjct: 306 TAPRSHLSKPTVLPASNMVQSKPTALPASNMVQSKPT-ALPASNMVQSKPTALPASNMVQ 364

Query: 698 S 700
           S
Sbjct: 365 S 365


>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
          Length = 582

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 455 RTEKSSRN--SGTLSRS-RMRPL*TNPRNSLSTKPGRSGNSSREKYPTT 592
           R   SSRN     LSR+ R+ P   NPR+S S++  R   SSR+   +T
Sbjct: 198 RDSPSSRNPRDSPLSRNPRVSPAFRNPRDSPSSRNPRDSPSSRDPRDST 246


>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
          Length = 1376

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 503 MRPL*TNPRNSLSTKPGRSGN----SSREKYPTTVPSGG*IKTPPSRT 634
           ++PL TN     +T PG SG     +S E+YP T+P G     P + T
Sbjct: 387 VQPL-TNTERYPNTLPGGSGAVQPVASTERYPNTLPGGSGAVQPMTNT 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,813,246
Number of Sequences: 59808
Number of extensions: 605550
Number of successful extensions: 1618
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)