Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B12
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 219 3e-58
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 116 5e-27
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 106 4e-24
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 93 3e-20
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 92 1e-19
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 89 5e-19
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 79 6e-16
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 29 0.81
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 5.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 10.0
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 219 bits (536), Expect = 3e-58
Identities = 110/213 (51%), Positives = 148/213 (69%), Gaps = 1/213 (0%)
Frame = +3
Query: 189 AGLTSVAXRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQV*RA 368
AG+TSV G + A V +Q+KVPD+L+D ++V H+F +T IGCVMTG IAD+R+QV RA
Sbjct: 33 AGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRA 92
Query: 369 RYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKT 548
R EAA ++YK G +P +L +R+A+I+QV TQ A MRPLG +M L+A DDE GP ++K
Sbjct: 93 RSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKL 152
Query: 549 DPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLST-DDAIQLAISCLSQVLSVDFKSS 725
DP+G+Y YKA +AG K + +LEK+ KK S D ++ I L LS DFKS+
Sbjct: 153 DPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALMSSLSTDFKST 212
Query: 726 EIEIGVVSKDNPXFRVLTETEIDRHLTAIAEKD 824
E++IGVV D P FRVL+ EI+ HL +IAEKD
Sbjct: 213 ELQIGVVEDDKP-FRVLSVEEIEAHLQSIAEKD 244
Score = 60.9 bits (141), Expect = 2e-10
Identities = 28/50 (56%), Positives = 32/50 (64%)
Frame = +2
Query: 107 GFDRHITIFSPEGRLYQVEYALKAINQGWVDICGXTRYRCSCSGSSTQGP 256
GFDR IT+FSPEGRLYQVEYA KA N + G T C+C S + P
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVP 55
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 116 bits (278), Expect = 5e-27
Identities = 72/189 (38%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Frame = +3
Query: 189 AGLTSVAXRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQV*RA 368
AG+TSV + TD V+A ++K L AS+ + A+T IG V +GM D R V ++
Sbjct: 30 AGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKS 89
Query: 369 RYEAANWQYK--YGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVY 542
R + A YK Y P IL + IA + Q TQ+ +RP G S+ L+A DE GP +Y
Sbjct: 90 R-KVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSL-LVAGMDEKGPSLY 147
Query: 543 KTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVLSVDFKS 722
+ DPSG Y ++KA A G + +LEK+ +L DDA+ AI L + +
Sbjct: 148 QVDPSGTYFAWKATAIGKSSTAAKTFLEKRY--NDELELDDAVHTAILALKETFEGELTE 205
Query: 723 SEIEIGVVS 749
IEI VVS
Sbjct: 206 DNIEIAVVS 214
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 122 ITIFSPEGRLYQVEYALKAINQG 190
+T FSP G+L Q+EYAL A+N G
Sbjct: 9 LTTFSPNGKLVQIEYALNAVNAG 31
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 106 bits (254), Expect = 4e-24
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Frame = +3
Query: 186 RAGLTSVAXRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQV*R 365
R G T++A RG + V+ +RK +L + ++ + + + + G+ AD+R + +
Sbjct: 28 RRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDK 87
Query: 366 ARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYD-DEAGPCVY 542
AR EA N + + + L R +A + Q YTQ+ +RP G S ++ +D + P VY
Sbjct: 88 ARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVY 147
Query: 543 KTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVLSVDFKS 722
+T+P+G Y ++KA A G + YLEK K+ LS D+ I LA+S L +V V S
Sbjct: 148 QTEPAGIYNAWKATAIGRASKAAREYLEKNWKE--GLSRDETIHLAVSSLLEV--VQTAS 203
Query: 723 SEIEIGVV 746
IE+ ++
Sbjct: 204 GNIELAIM 211
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +2
Query: 104 AGFDRHITIFSPEGRLYQVEYALKAINQG 190
+G+DR +++FSP+GRL QVEY +A+ +G
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRG 30
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 93.5 bits (222), Expect = 3e-20
Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 2/180 (1%)
Frame = +3
Query: 222 DAAVVAAQRKVPDRLLDPA-SVTHLFALTDRIGCVMTGMIADSRSQV*RARYEAANWQYK 398
D V+AA++KV +LL+ S L+ + D + C + G+ AD+ + AR +
Sbjct: 41 DGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQT 100
Query: 399 YGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYK 578
+ E+P L RR+ D+ Q YTQ +RP G S + +D G +++++PSG Y S++
Sbjct: 101 FNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQ 160
Query: 579 AVAAGAKTVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVL-SVDFKSSEIEIGVVSKD 755
A + G + + + ++ K D++ D+A +A+ LS+ L S +IE ++KD
Sbjct: 161 ANSIGGNSTSVQSLMRQEYK--DDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATITKD 218
Score = 48.0 bits (109), Expect = 2e-06
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +2
Query: 101 SAGFDRHITIFSPEGRLYQVEYALKAINQGWV 196
S +D TIFSPEGRLYQVEYAL+AIN V
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGV 33
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 91.9 bits (218), Expect = 1e-19
Identities = 55/208 (26%), Positives = 107/208 (51%), Gaps = 6/208 (2%)
Frame = +3
Query: 186 RAGLTSVAXRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQV*R 365
+ G T++ + DA V+ ++++ L++ SV LF + IGC ++G+ AD+R+ +
Sbjct: 32 KLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEH 91
Query: 366 ARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAE------MRPLGCSMMLIAYDDEA 527
AR + N ++ Y + + I D++ + + + RP G + +LIA DE
Sbjct: 92 ARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVA-LLIAGIDEH 150
Query: 528 GPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVLS 707
GP +Y ++PSG Y Y+A A G+ + + L K+ K D++ ++A L + L QV+
Sbjct: 151 GPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHK--DMTLEEAEVLILKVLRQVME 208
Query: 708 VDFKSSEIEIGVVSKDNPXFRVLTETEI 791
S +++ V+ + F + + E+
Sbjct: 209 EKLDSKNVQLAKVTAEG-GFHIYNDEEM 235
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2
Query: 110 FDRHITIFSPEGRLYQVEYALKAINQG 190
+DR + FSPEGRL+QVEYA++AI G
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLG 34
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 89.4 bits (212), Expect = 5e-19
Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 1/209 (0%)
Frame = +3
Query: 198 TSVAXRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQV*RARYE 377
T + + D ++A ++ V +LL P + ++ IG TG I D + V RAR E
Sbjct: 35 TCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDE 94
Query: 378 AANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPS 557
A +W+ YGS IP ++ R+ + Q++T + +RP G + YD E GP +Y +P+
Sbjct: 95 ATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSE-GPHLYMVEPN 153
Query: 558 GYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVLSVD-FKSSEIE 734
G Y Y AAG LEK S L DA++ A L + K EIE
Sbjct: 154 GVYWGYNGAAAGKGRQVARNELEK--LNFSSLKMKDAVKEAARILYATHDEENNKEHEIE 211
Query: 735 IGVVSKDNPXFRVLTETEIDRHLTAIAEK 821
+ V + E+ + A A +
Sbjct: 212 MTWVGVETNGIHTPVPDELLQEAEAYARR 240
Score = 32.7 bits (71), Expect = 0.066
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 107 GFDRHITIFSPEGRLYQVEYALKAI 181
G+D + FSP+GRL+Q EYA KA+
Sbjct: 7 GYDLGL-FFSPDGRLFQAEYAYKAV 30
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 79.4 bits (187), Expect = 6e-16
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Frame = +3
Query: 291 LFALTDRIGCVMTGMIADSRSQV*RARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 470
L + D IG + G+ D+R + EA + + + IPV L ++A+ +Q+ TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 471 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSD 650
RP G ++I Y DE+GP + + PSG Y + G+++ Y+E+ L D
Sbjct: 123 YGRRPYGVGFLVIGY-DESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPD 181
Query: 651 LSTDDAIQLAISCLSQVLSVDFKSSE--IEIGVVSKD 755
S ++ I A+ L LS D + +E + I V+ KD
Sbjct: 182 SSREELILSALRALRDTLSKDQELTEENVSISVIGKD 218
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2
Query: 110 FDRHITIFSPEGRLYQVEYALKAINQG 190
+D T +SP+GRL+QVEYAL+AI QG
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQG 32
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 29.1 bits (62), Expect = 0.81
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 383 QLAVQVW--VRDTCAYLMQTHS*YLSSLHPKCRDETSGL 493
QLA ++W +RDTC++L + Y+ S+ +D L
Sbjct: 530 QLATEIWAVLRDTCSFLQGSSGPYVGSVSTIAKDALESL 568
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 384 WQPHSELVILETGYQQSSR 328
WQP S + L TGY ++R
Sbjct: 205 WQPDSSQIFLTTGYDSTAR 223
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/62 (22%), Positives = 24/62 (38%)
Frame = +3
Query: 330 GMIADSRSQV*RARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLI 509
GM +R+ +E +W Y + V LCR + ++ N + + LI
Sbjct: 606 GMCPYTRAVSQHVEWENDSWMYVLNVSLQVAKLCRHVGNVFMELNTNKLANAINYLISLI 665
Query: 510 AY 515
Y
Sbjct: 666 LY 667
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,873
Number of Sequences: 5004
Number of extensions: 58216
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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