Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B09
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579...    64   1e-10
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757...    44   1e-04
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    30   2.0  
05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786...    29   6.2  

>10_02_0143 +
           5795028-5795108,5795197-5795403,5795878-5795976,
           5796136-5796224,5797876-5797992,5798262-5798367,
           5798522-5798606,5798699-5798808,5799335-5799465,
           5799686-5799782,5800310-5800603
          Length = 471

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
 Frame = +3

Query: 231 ASXEIFAIGLILGQMTDARENVI--HLARTPEEKGSEIGIESNYGLDKPEIAKNLSSVSE 404
           AS     +GL++G+++ + +  +   L  TP                 P+ AK  SS + 
Sbjct: 21  ASASPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPACSLLRAAPNPKAAKAASSDAS 80

Query: 405 A-------WIADHARHVTRMLPGGMFVQGIFVTSDEDVFEDPNCFSKLRSTLNHIYKGLS 563
           +       W+A+HAR V+RML GGM V GI++ + E  F+     +   + L+ + + +S
Sbjct: 81  SSLDFDVDWVAEHARQVSRMLLGGMTVIGIYIWASEASFK-----ATSPAVLSQVLRAVS 135

Query: 564 INEYMFGNCPYSNERLILHMSTSTKVLTCKSLEVGGLNKNTTLKPVEWKFSPKALSWQRL 743
               ++G     +ERL++H+S S +   C+  ++     +  L+P ++K++    S Q  
Sbjct: 136 QVAPLYGT--GVDERLLIHISYSPRRWACRICDM----SSGRLRPCDFKYTKLLASLQTF 189

Query: 744 DCYYEFDEIYPVI 782
            C Y F+   PV+
Sbjct: 190 RCTYNFEIRLPVV 202


>08_01_0009 +
           68825-68950,72571-72669,72841-72929,74971-75087,
           75747-75906,76419-76549,76810-76906,77584-77877
          Length = 370

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 31/111 (27%), Positives = 58/111 (52%)
 Frame = +3

Query: 432 VTRMLPGGMFVQGIFVTSDEDVFEDPNCFSKLRSTLNHIYKGLSINEYMFGNCPYSNERL 611
           V+RML GGM V GI++ + E  F+     +   + L+ + + +S    ++G     +ERL
Sbjct: 43  VSRMLLGGMTVIGIYIWASEASFK-----ATSPAVLSQVLRAVSQVAPLYGT--GVDERL 95

Query: 612 ILHMSTSTKVLTCKSLEVGGLNKNTTLKPVEWKFSPKALSWQRLDCYYEFD 764
           ++H+S S +   C+  ++     +  L+P ++K+S    S Q   C Y F+
Sbjct: 96  LIHISYSPRRWACRICDM----SSGRLRPCDFKYSKLLASLQTFRCTYNFE 142


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +3

Query: 624 STSTKVLTCKSLEVGGLNKNTTLKPVEWKFSPKALSWQR 740
           S S  VL      +GGLN+NTT   VE  F  +A SW+R
Sbjct: 596 SHSVVVLGDSLHALGGLNRNTTFSSVE-IFDTRANSWRR 633


>05_03_0055 -
           7863410-7863530,7864205-7864314,7864341-7864553,
           7865342-7865406,7865511-7865635,7865936-7866164,
           7866270-7866348
          Length = 313

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 246 IFLXRHIVPNIEGSVSGEYTVLGIV*FILFYKYQNE--NSLSFINWLALSVFN 94
           IF+ RH+  N  G+ +   T +  V F+LF+ + +E  N + F   +A+   +
Sbjct: 254 IFIIRHLAWNFSGNETIPNTRISCVMFVLFFVFTHESGNKIYFSGTVAIQAMD 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,352,118
Number of Sequences: 37544
Number of extensions: 396027
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)