Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B09
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)                   29   4.7  
SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
          Length = 551

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 513 CFSKLRSTLNHIYKGLSINEYMFGNCPYSNERLILHMSTSTKVLTCKSLEVGGLN 677
           CFSK+R+ LNH  K  ++N  + G   Y+   +  ++     +  C+ L  GG N
Sbjct: 220 CFSKMRALLNH--KATNVN--IEGRNKYTPLHIAAYLEHRNALEICQKLLDGGAN 270


>SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 430 CRAWSAIHASDTLLKFFAISGLSRP*FDSIPISDPFS-SGVRARW 299
           C   S +     L+ FF  +   +P FD+ P SDP   + V A+W
Sbjct: 96  CTVCSKLRQDPYLVNFFLEADKLKPLFDACPPSDPADITTVAAKW 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,470,967
Number of Sequences: 59808
Number of extensions: 486632
Number of successful extensions: 889
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)