Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B08
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-12
SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64) 32 0.27
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07) 30 1.5
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_36671| Best HMM Match : IBB (HMM E-Value=2.8) 29 1.9
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8) 28 5.9
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2) 27 7.8
SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01) 27 7.8
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 27 7.8
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0) 27 7.8
>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/63 (50%), Positives = 43/63 (68%)
Frame = +2
Query: 251 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKPQ 430
FGKME A E++YF + Q +QLA LK H IA H+++I+ HE+AIRRHKE + EK
Sbjct: 80 FGKMEQAHEEQYFRQMQAQQLAALKEHQEHLIATHKQEIEHHEEAIRRHKEALKSYEKKD 139
Query: 431 *TG 439
+G
Sbjct: 140 GSG 142
>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
Length = 520
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 257 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIR 391
K A E E K+Q ++L + G L E+A + IK+ ++AIR
Sbjct: 349 KRRLAAETEEALKEQDDRLGKILGKLQLEVARRDDIIKKQDEAIR 393
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +2
Query: 251 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 421
F +++ A+ D Y+ +KE+ E+ Q+Q ++ ED ++ K+++SD+E
Sbjct: 1595 FDELDGAKRDRDKYQLEKEEAEKRLQSYEDELNEKQKQKEKAEDNLKALKKRISDLE 1651
>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
Length = 659
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 390 LIASSCRLICSWWKAISLFKCPFRFAS 310
LI + C +C+W KA+S + FR AS
Sbjct: 124 LITAVCLCLCAWVKAVSFSRLEFRAAS 150
>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 299 QKEQLANLKGHLNKEIAFHQEQ----IKRHEDAIRRHKEQM 409
Q E LK HL +++A HQE+ ++HE + KEQM
Sbjct: 926 QYEGALQLKEHLKRQLASHQEKSTRYTRQHEKKVAALKEQM 966
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 293 KKQKE-QLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 424
K+Q E ++ LK HL KE HQ ++R + + HK+ +++I K
Sbjct: 689 KQQYESEIQGLKDHLAKESQRHQADVRRRD---QEHKKDITNIHK 730
>SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)
Length = 1080
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 254 GKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAI 388
G +E D Y KQ+ +L LK HL I FHQ+ K + I
Sbjct: 188 GLLEERGVDGSSYSKQRLKLC-LKHHLEDRITFHQQPSKNKPEII 231
>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/49 (24%), Positives = 30/49 (61%)
Frame = +2
Query: 263 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQM 409
E+ RE+ +K+KE+L ++K L +++ Q +I ++ + +++E +
Sbjct: 452 ESYREELMNERKEKERLLSIKDKLRRDLDSTQSRISSLQEQVYKYREHI 500
>SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 257 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 424
K+ E++ F +K E LA K +L KE+ +E + + K Q++DIE+
Sbjct: 223 KLSRLEEEKDFLQKMVETLAIAKENLTKEVEGLKESNQLMQKDSADAKSQLNDIEE 278
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 257 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 415
K + EDE+ K+ KE+ K H A H+++ K+H+ ++ K++ SD
Sbjct: 1174 KALSGEEDEWVEKEGKEKKKKHKKHKKHGSAKHKKKDKKHKK--QKEKQKTSD 1224
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 278 DEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 424
D + K+ ++L+ HL K++ + + ++EDA+ ++ + DIEK
Sbjct: 2537 DAQDFNKRYDKLSAGIDHLKKKVEDTKAAVDKYEDALSPVQKALDDIEK 2585
>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
Length = 319
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 251 FGKMEAAREDEYFYKKQKEQ-LANLK-GHLNKEIAFHQEQIKRHEDAIRRHKEQM 409
FG+ ++ EYF K+ L N + G KEI H +Q K H + R E M
Sbjct: 63 FGQSLVTKDLEYFESLYKQNTLTNYEIGFRLKEIKKHLDQQKHHVEVQNRRYEAM 117
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 257 KMEAAREDEYFYKKQKEQL-ANLKGHLNKE-IAFHQEQIKRHE-DAIRRHKEQMSDIEKP 427
++E R++E +KQ++QL + L +E I E+ KR E + R K+Q D+EK
Sbjct: 145 ELEEKRKEEEEKEKQRKQLEVEKQKRLEEERIRSQNEERKRREREQKEREKQQKLDMEKE 204
Query: 428 Q 430
+
Sbjct: 205 E 205
>SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2)
Length = 251
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 456 NYHYRCPVHWGFSMSDICSL*RLIASSCRLICSW 355
+Y CP HWGF +++ R C + SW
Sbjct: 194 DYRLGCP-HWGFEWTEMAGFYRFEPKPCVNMSSW 226
>SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
Length = 361
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 456 NYHYRCPVHWGFSMSDICSL*RLIASSCRLICSW 355
+Y CP HWGF +++ R C + SW
Sbjct: 304 DYRLGCP-HWGFEWTEMAGFYRFEPKPCVNMSSW 336
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 272 REDEYFYKKQKEQLANLKGHL 334
+E+E F+KK+K+ A L+G+L
Sbjct: 708 KEEEDFHKKEKQNYAGLRGNL 728
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 338 KEIAFHQEQIKRHEDAIRRHKEQM 409
K++ HQEQ+ H + + HKEQ+
Sbjct: 23 KQLIAHQEQLIAHTEQLIAHKEQL 46
>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
Length = 567
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 353 HQEQIKRHEDA-IRRHKEQMSDIEKPQ*T 436
+Q ++R +DA +RRHK MS I+K Q T
Sbjct: 381 YQRILRRKQDAMLRRHKSLMSRIKKKQAT 409
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,500
Number of Sequences: 59808
Number of extensions: 234620
Number of successful extensions: 741
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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