Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B06
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4V6Y7 Cluster: IP01295p; n=3; Sophophora|Rep: IP01295p...    38   0.37 
UniRef50_UPI0000DB729E Cluster: PREDICTED: similar to myotubular...    36   0.85 
UniRef50_Q17BB2 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_Q16YL9 Cluster: Zinc finger protein; n=1; Aedes aegypti...    36   1.1  
UniRef50_UPI0000D56508 Cluster: PREDICTED: similar to myotubular...    36   1.5  
UniRef50_Q17BA2 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_UPI0000D56201 Cluster: PREDICTED: similar to CG2202-PA;...    35   2.6  
UniRef50_P17492 Cluster: Replication protein; n=6; Proteobacteri...    35   2.6  
UniRef50_Q4P2V3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_Q17EK8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  
UniRef50_Q16IT9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q4V6Y7 Cluster: IP01295p; n=3; Sophophora|Rep: IP01295p -
           Drosophila melanogaster (Fruit fly)
          Length = 418

 Score = 37.5 bits (83), Expect = 0.37
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = +3

Query: 189 PTVCRCCLAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYSKSSGPNSNSRLICEPC 368
           P VCRCCL E           +    +  +++  E  +++ A     G N    +IC+ C
Sbjct: 9   PLVCRCCLLE-------QPPLYHSLYDASSQLAVELKALAPALRLEHGDNLTD-VICDLC 60

Query: 369 ISRLRDASDFKKQVQECEK 425
           + RL DA DF+++ +  E+
Sbjct: 61  LRRLHDARDFQRRCEHSEQ 79


>UniRef50_UPI0000DB729E Cluster: PREDICTED: similar to
            myotubularin-related protein 3 isoform c; n=2;
            Apocrita|Rep: PREDICTED: similar to myotubularin-related
            protein 3 isoform c - Apis mellifera
          Length = 1013

 Score = 36.3 bits (80), Expect = 0.85
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
 Frame = +3

Query: 177  WRPGPTVCRCCLAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYSKSSGPNS---NS 347
            W P   V RC    GC     TE FW+G+R+ +     + F    + + +  PN    N 
Sbjct: 883  WVPDHAVNRCM---GC----DTE-FWLGRRKHHCRCCGKIFCADCSENSTPLPNEQLYNP 934

Query: 348  RLICEPCISRLRDASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTSSTDKRVK 512
              +C  C SRL       +    C+   +++   G + T L S  +  ST +R K
Sbjct: 935  VRVCSDCFSRLH------RHTSPCQYN-IRHQSKGENDTELSSNSENLSTCQRSK 982


>UniRef50_Q17BB2 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 583

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
 Frame = +3

Query: 198 CRCCLAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYSKSSGPNSNSRLICEPCISR 377
           CR C     ++ +    +    +E+ ++M      + ++YS     +   + ICE C++R
Sbjct: 5   CRICRKTAAFEPVWLNSWSESLKELISDMYTYCTQLEVSYS-----DLLPQQICEDCLNR 59

Query: 378 LRDASDFKKQVQECEKTFMQYLDPGSSST----TLESEVQTSSTDKRVKVEQ 521
           L  A DF+K  +  +  F + L     ST     +E+E    + D  +K+ +
Sbjct: 60  LTMAYDFRKLCRHSDALFREQLRRQKRSTITPVVVEAEGSEINMDWTIKIPE 111


>UniRef50_Q16YL9 Cluster: Zinc finger protein; n=1; Aedes
           aegypti|Rep: Zinc finger protein - Aedes aegypti
           (Yellowfever mosquito)
          Length = 380

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
 Frame = +3

Query: 195 VCRCCLAEGCYKDI-STEYFWMGKREVYAEMLAETFSVSIAYSKSSGPNSNSRLICEPCI 371
           +CR CL EG +  I +T+   M      A+ML    ++ +  SK+ G  +    IC  C+
Sbjct: 8   LCRVCLEEGVFTSIFNTDLVAMAP----ADMLVMCANIKV--SKNDGLPTT---ICNNCM 58

Query: 372 SRLRDASDFKKQVQECEKTFMQY--LDPGSSSTTLESEVQTSS----TDKRVKVEQVKIE 533
            RL  A   K+Q +  +    QY  L  G  S +++ E  T      T K+  V + K+ 
Sbjct: 59  YRLGVAFHLKQQCENSDMRLRQYIGLMTGVYSNSMDKETMTDDSWMVTSKKSDVGERKVT 118

Query: 534 RQ 539
           ++
Sbjct: 119 KK 120


>UniRef50_UPI0000D56508 Cluster: PREDICTED: similar to myotubularin
            related protein 3 (predicted); n=1; Tribolium
            castaneum|Rep: PREDICTED: similar to myotubularin related
            protein 3 (predicted) - Tribolium castaneum
          Length = 1035

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +3

Query: 141  DNFVIMADKTSEWRPGPTVCRCCLAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYS 320
            +N ++    T+ W P   V RC    GC     TE FW+GKR+ +       F  S + +
Sbjct: 931  ENSILTECTTTLWVPDHAVSRCT---GC----QTE-FWVGKRKHHCRKCGRIFCASCSEN 982

Query: 321  KSSGPNS---NSRLICEPCISRLR 383
             +  P+    N   +C  C S+LR
Sbjct: 983  STPLPSEQLYNPVRVCTGCYSKLR 1006


>UniRef50_Q17BA2 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 731

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 24/83 (28%), Positives = 39/83 (46%)
 Frame = +3

Query: 198 CRCCLAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYSKSSGPNSNSRLICEPCISR 377
           CR CLA    + IS       + ++  +ML+E    + ++  S  P      +C+ C+ +
Sbjct: 17  CRTCLAAEVDELISLHCRCESQDKLVMDMLSEVAPQTRSHRNSELPQH----VCDHCLVQ 72

Query: 378 LRDASDFKKQVQECEKTFMQYLD 446
           L +A  F+KQVQ     F Q  D
Sbjct: 73  LDEAFTFRKQVQNALLGFRQAQD 95


>UniRef50_UPI0000D56201 Cluster: PREDICTED: similar to CG2202-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG2202-PA - Tribolium castaneum
          Length = 822

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +3

Query: 348 RLICEPCISRLRDASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTS 491
           +LIC  C  +L+ A  FK+Q QE + +  +Y+    S   +++EV+ +
Sbjct: 58  KLICATCTEQLKGAYIFKQQCQETDVSLREYVKNFKSDDDVKTEVEAT 105


>UniRef50_P17492 Cluster: Replication protein; n=6;
           Proteobacteria|Rep: Replication protein - Neisseria
           gonorrhoeae
          Length = 328

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +3

Query: 231 DISTEYFWMGKREVYAEMLAETFSVSIAYSKSSGPNSNSRLICEPCISRLRDASDFKKQV 410
           ++ T+Y  +G RE+  E L E   V   Y +    NS ++ + EP I+ + + SD   +V
Sbjct: 145 ELITQYRSVGSREITVEKLKEWLQVENKYPRF---NSLNQRVLEPAITEINEKSDLVVEV 201

Query: 411 QECEK 425
           ++ ++
Sbjct: 202 EQIKR 206


>UniRef50_Q4P2V3 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 859

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 251 KIFSGNVFVTALSETTPTNRGPGSPFTCFISH 156
           ++ SG+    AL +  PT R P +P+TCF+ H
Sbjct: 80  RLSSGSPSSFALKDVGPTKRNPRAPYTCFVLH 111


>UniRef50_Q17EK8 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 207

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +3

Query: 195 VCRCCLAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYSKSSGPNSNSRLICEPCIS 374
           +CR C AEG   ++S  +      E    +L + +  +     + G + N+ +ICE CI+
Sbjct: 28  ICRLCCAEG-QAELSLLFPEGSSYEANKLLLKKIYECTTVQIINEGDDQNA-MICEACIA 85

Query: 375 RLRDASDFKKQ 407
           ++ D   +++Q
Sbjct: 86  KIDDFYSYREQ 96


>UniRef50_Q16IT9 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 466

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +3

Query: 354 ICEPCISRLRDASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTSSTDKRVKVEQVKIE 533
           +C+ C S + +  DF ++VQ+  +++++ L         + +  T+ST K   +E VK+E
Sbjct: 8   VCQQCCSIIGEFYDFSEKVQQ-NQSYLRMLAGECQEVKHDPDQWTASTSKSEIIEMVKVE 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,941,684
Number of Sequences: 1657284
Number of extensions: 12200590
Number of successful extensions: 32550
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32526
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)