Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B05
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               269   2e-72
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 99   2e-21
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   2.6  
SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)                       30   2.6  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)           28   7.8  
SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.8  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  269 bits (660), Expect = 2e-72
 Identities = 131/175 (74%), Positives = 145/175 (82%)
 Frame = +1

Query: 223 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 402
           DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ  +D+G P
Sbjct: 85  DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGP 144

Query: 403 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 582
           I IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV+MS +QEIL TGIKVVD
Sbjct: 145 ITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVD 204

Query: 583 LLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 747
           LLAPYA               TVLIMELINNVAKAHGGYSVFAGVG +     D+
Sbjct: 205 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGYQPTLATDM 259


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score =   99 bits (238), Expect = 2e-21
 Identities = 48/79 (60%), Positives = 54/79 (68%)
 Frame = +1

Query: 553 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 732
           +L TGIKV+DL+ PYA               TVLI ELINN+AK HGG SVFAGVGERTR
Sbjct: 2   VLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTR 61

Query: 733 EGNDLYHEMIESGVISLKD 789
           EGNDL  EM+ESG+I   D
Sbjct: 62  EGNDLLREMLESGIIKYGD 80


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
 Frame = +1

Query: 340 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 516
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP    + A +  +
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70

Query: 517 APEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 696
           AP  +  +  +E ++TGIK VD L P                 T + ++ I N  + + G
Sbjct: 71  APGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDG 130


>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 333 NCVLTQMLGYLKYEAGRSILHLKGI*NRRQVIFEL-HIYHSTDNGNNLTLAFSCRFSS 163
           NC+L  + GYLK ++   I++  G     QV++ L  +Y S + GNNL   F    +S
Sbjct: 48  NCLLWTIYGYLKDDSTIIIVNFVGA--LLQVVYILCFLYFSRERGNNLAFLFYSAIAS 103


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 458 SPITLMMRPRV-SAPTGIRIGEPESSTG 378
           S +T   +P   SAPTGI  G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)
          Length = 231

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -1

Query: 582 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTTL-VNRFAD--YIDDATEGFSSH 415
           +DD Y  Y + L+  +VD L+         V G    L V+ + D  Y+D   +GF SH
Sbjct: 168 VDDLYNGYVDDLIDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDGFQSH 226


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = -2

Query: 524 SGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSM 345
           SG+S+  A +L    GP SS+  P T    P    PTG+ +  P S    P   P  P M
Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725

Query: 344 AMVRTVFSP 318
                  SP
Sbjct: 726 GTHPQQVSP 734


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 394 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 489
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
          Length = 1119

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 637 HQLRQTTQSFLLWHKERADRRLLYQLRESPAAQTCRQTLEL 515
           + LR   +    WH+E+  R +++ LRE  A   C Q +E+
Sbjct: 467 YDLRGMKEEDAQWHREQVSRGVVFNLREELAIY-CHQDVEV 506


>SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -1

Query: 624 KQPNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTTLVNRF 457
           +QP L   G       D +  YE+LL  RH DKL  +  N S +  GD      RF
Sbjct: 50  QQPMLLEIGAPINIFGDIHGQYEDLL--RHFDKL-GYPPNESYIFLGDYVDRPKRF 102


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 180  SCRFSSIVPLVNGIDCNDFSTF*KGFLSN*FNGXNAXSNSTYCPQHFQKSAAQSGKW 10
            +CR  S     N I+CN F       LS  +       +S  CP+ F K+ A+  +W
Sbjct: 1709 ACRLLSSAGYSNLIECNSF-------LSRLYKYDTGLDSSMVCPRVFLKNIAECKRW 1758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,495,575
Number of Sequences: 59808
Number of extensions: 548430
Number of successful extensions: 1536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)