Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B03
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)               29   3.3  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               29   4.3  
SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)           29   4.3  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.5  
SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 314 PTLEPIQDN-FIIVNVLRIPVCHSMICTYIVSFLYF 418
           PT+EP QDN FI V    +P  +  ICT+I    YF
Sbjct: 107 PTIEPYQDNVFINVICRNLPQWNDRICTHIKLIKYF 142


>SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 168 HDQNHDQSQHEDSHHRTD 221
           HD +HD   H+D HH  D
Sbjct: 108 HDDDHDDDDHDDDHHHHD 125


>SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
          Length = 744

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 93  VLIDQDGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTDPVFVH 236
           V ++Q+GH ++ SS       P   + + HDQ+    S + + PV V+
Sbjct: 263 VPVNQEGHDQTSSSVSGDDSAPVPVNQEGHDQTSSPVSGYDSAPVLVN 310


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 262 YCMDSCMNSDHYCPNCNAYIGTYTR*FH 345
           YC  +C ++ +YCP C  +I T+ +  H
Sbjct: 425 YCCQTCASNLYYCPLCKTFI-TFVQRIH 451


>SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)
          Length = 291

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 114 HSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRT 218
           HS +R STG         H   HD  QH+ + H T
Sbjct: 175 HSTTRHSTGTTGHDTTQNHTVQHDTVQHDTAQHDT 209


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 605 CMMLNNLVGFSENNLHSAPD 546
           C+ + N   FSENN H  PD
Sbjct: 189 CLTIENAQDFSENNTHKVPD 208


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 271  DSCMNSDHYCPNCNAYIGTYTR*FHNCERI--AYSCMP 378
            D+C    HYCPN +A I      +HN  RI     CMP
Sbjct: 2441 DACPPG-HYCPNGSAPISCPAGFYHNAGRIWNRTQCMP 2477


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 108  DGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTD 221
            + H R R S  +     +  H  +H   QH DSHH  +
Sbjct: 944  ESHKRHRHSHHHHYQHYQYNHHHDHQSHQHHDSHHHRE 981


>SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 171 DQNHDQSQHEDSHHRT 218
           D  HD S+H+DS H T
Sbjct: 77  DSEHDDSEHDDSEHET 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,367,345
Number of Sequences: 59808
Number of extensions: 448737
Number of successful extensions: 1503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)