Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B01
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14331| Best HMM Match : SAG (HMM E-Value=5.7)                       40   0.002
SB_785| Best HMM Match : hATC (HMM E-Value=0.13)                       30   1.3  
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)              29   2.3  
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)              29   3.0  
SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)                      28   5.2  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_14331| Best HMM Match : SAG (HMM E-Value=5.7)
          Length = 141

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/80 (28%), Positives = 38/80 (47%)
 Frame = +3

Query: 192 KYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQP 371
           KY   +    R P+ ++    D V   EA  Q+  DR V+ E +  LR +   C   E+ 
Sbjct: 4   KYFKRYTEKARAPSFEEIDRRDPVAFSEAREQWVLDRLVELETVKELRDQVAHCYRQEEV 63

Query: 372 DHATKCRSLWDKYKSAEEAW 431
           +    CR++ D+Y  A +A+
Sbjct: 64  NARQNCRTIVDQYMQAFKAY 83


>SB_785| Best HMM Match : hATC (HMM E-Value=0.13)
          Length = 205

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 96  DNVFRAFCNALYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRRVP 230
           D   R F   LYNTV     +  + ++   ++K  W+H +  ++P
Sbjct: 108 DWFLRKFNVQLYNTVPGCEVYVSDVLINTEERKVKWWHDHKEQLP 152


>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
          Length = 773

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 150 VTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEI 320
           + W+++ +   N   + W +      PT++Q +D  VV DFE+    ++ R    EI
Sbjct: 216 MAWWQQFLESWNSVSF-WLYPGLEATPTVEQPFDYLVVIDFESTCWKEKRRNSAPEI 271


>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
          Length = 695

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
 Frame = +3

Query: 75  KTEILLXDNVFRAFCNALYNTVDAPVTWFRETVVEPNQKKYPWYHQ----NYRRVPTIDQ 242
           K E+L  D +F A CN         +   R+ V +     Y   H+    N +   T+D 
Sbjct: 36  KGEVLDDDGLFEAMCNNAQKAASLAMGKRRQDVDQLTLDSYDDIHEVLPSNTQVAATLD- 94

Query: 243 CYDDDVVCDFE--ANAQFKRDRAVDSEILSILRQRYEDCMMYEQPD 374
              DD+  D +  A +   ++RAV  +I   L +  ED +  E+ +
Sbjct: 95  --TDDMYVDMKNRATSSALKERAVSYDIQDSLCEVAEDAVKEEEAE 138


>SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 292 NETGQWTLRY*AFSGNAMKIA 354
           +E G+W LRY A++GN M+ A
Sbjct: 523 DEIGEWQLRYIAYTGNNMRRA 543


>SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 789

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 116 LQCSLQYSRCSGNMVPRNCCRTKP 187
           L C+ ++ RC  ++  RNC R KP
Sbjct: 764 LSCNRRHKRCHASVTLRNCERVKP 787


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -3

Query: 470  RITISTEVTIFNEPSFLSRLVLVPKRPAFSCMVWLLIHHAIF 345
            ++T+ T +T   +  FLS ++ VP+ P +   ++  + +++F
Sbjct: 1119 KVTMETNITNMGQCLFLSDVMAVPEGPTYVTTIFTCLLNSVF 1160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,913
Number of Sequences: 59808
Number of extensions: 363697
Number of successful extensions: 1463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)