Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A20
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    30   0.44 
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.59 
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    27   2.4  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   3.1  

>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 671 LRASQKSLPTFCRCWVFRWKPLKGPRSK 588
           ++++QK+  T    W   WKP   PRSK
Sbjct: 177 MQSAQKNKTTIYTAWATEWKPFGHPRSK 204


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +1

Query: 295  WKKPPLVYCDYHGHSRKKNVFFYGC------AGAESWCSSDRLVQ 411
            W  P +++ D+ G+S K +V+  GC      AG   W S+D  +Q
Sbjct: 998  WMAPEVIHNDHQGYSAKVDVWSLGCVVLEMLAGRRPW-STDEAIQ 1041


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 403 GGHCYTSSQRQRNRRRIHSFYASG 332
           GGHCY   Q+Q +    H  Y  G
Sbjct: 378 GGHCYYWDQKQHDHPYEHDLYVKG 401


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 658 CEALNGLN-DSAANVDIQLTKDLNGEAAVESELGSGSDSVLKTDS 789
           C +L G   DS  N+D+ L K L+ E  + +      +++ KTD+
Sbjct: 298 CPSLQGFEFDSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDA 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,068
Number of Sequences: 5004
Number of extensions: 68879
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)