Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A19
         (520 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4H3U0 Cluster: CCAAT enhancer binding protein alpha/ga...    34   2.2  
UniRef50_Q1DUK8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  

>UniRef50_Q4H3U0 Cluster: CCAAT enhancer binding protein alpha/gamma
           homolog; n=1; Ciona intestinalis|Rep: CCAAT enhancer
           binding protein alpha/gamma homolog - Ciona intestinalis
           (Transparent sea squirt)
          Length = 312

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 223 CSSSLSNLIPSPMMYNHYNVSKVSPL--QSKLHFYFE 327
           C+S+ S+  PSP+ YN YN   V+P   QS  H  F+
Sbjct: 100 CASACSSAAPSPVPYNFYNTPPVTPQRPQSPHHLQFD 136


>UniRef50_Q1DUK8 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 832

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 77  CTHVNKYSIILSIITLQHVILFCRRKLSVLSNIIXP 184
           C H   YS I  +I  QH    CR +L+  SN++ P
Sbjct: 594 CAHTFDYSCIEQVIERQHKCPLCRAELADTSNLVHP 629


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 377,797,032
Number of Sequences: 1657284
Number of extensions: 6772636
Number of successful extensions: 14155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14154
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)