Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A19
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.2  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   6.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.0  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +2

Query: 29  KDTTLRSDLFXLL*KDCTHVNKYSIILSIITLQHVILFCRRKLSVLSNIIXPLNYLKIRW 208
           ++TTLRS +  +L +  +     S++ ++   +H+ +FC R       +  P N L+I W
Sbjct: 337 ENTTLRSKVQDILLRIISVCGTKSLLRNLTNAKHLRIFCERLTKSQLAMFLP-NLLEI-W 394

Query: 209 LQ 214
           +Q
Sbjct: 395 VQ 396


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 364 TYLCNKDDYFIFLQNKNGVYFGVD 293
           T + N+ D  + + N NGVY G+D
Sbjct: 459 TAIRNQLDLLVIVINNNGVYHGLD 482


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 271  HYNVSKVSPLQSKLHFYFEEK*SNHLC 351
            ++  S++S LQ+K+H     + SNHLC
Sbjct: 1746 NFQNSELSRLQTKMHIPGVIELSNHLC 1772


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 175 NXPT*LFKNPMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SNHLCY 354
           N PT ++   + T  T SSS   +IP+ +         V  L+  ++ Y      N  CY
Sbjct: 160 NNPTTVYSGTVATTETFSSSTVVVIPTAI------CDGVRGLEYAVYDYTISSSMNEFCY 213

Query: 355 -KDR*TLMFLFSE 390
            K+  T +F F+E
Sbjct: 214 PKNGQTDVFAFNE 226


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 175 NXPT*LFKNPMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SNHLCY 354
           N PT ++   + T  T SSS   +IP+ +         V  L+  ++ Y      N  CY
Sbjct: 160 NNPTTVYSGTVATTETFSSSTVVVIPTAI------CDGVRGLEYAVYDYTISSSMNEFCY 213

Query: 355 -KDR*TLMFLFSE 390
            K+  T +F F+E
Sbjct: 214 PKNGQTDVFAFNE 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,432
Number of Sequences: 5004
Number of extensions: 32533
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)