Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A19
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255...    27   9.0  

>09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,
            2550893-2550988,2551418-2551482,2551558-2551591,
            2552469-2552540,2552567-2552644,2553416-2553477,
            2554267-2554530,2555057-2555246,2555432-2555500,
            2555613-2555669,2555746-2555846,2556029-2556146,
            2556225-2556272,2556362-2556487,2556960-2557118,
            2558119-2558216,2558324-2558416,2559741-2559937,
            2560231-2560354,2561121-2561334,2561773-2561830,
            2561955-2562433
          Length = 1022

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 32   DTTLRSDLFXLL*KDCTHVNKYSIILSIITLQHVILFCRRKLS 160
            D T    +  L+   C   N YS ++S++  +H+I+F +R ++
Sbjct: 918  DATRAGSIAHLINHSC-EPNCYSRVISVLGDEHIIIFAKRDIN 959


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,112
Number of Sequences: 37544
Number of extensions: 160547
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)