Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A18
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0257 + 3407201-3407291,3407522-3407628,3407812-3407889           31   0.73 
05_05_0122 - 22533212-22533375,22533658-22533763,22533878-22533916     29   2.9  
07_03_0431 - 18152041-18152085,18152368-18152685,18152927-181534...    28   6.8  
05_03_0209 + 10139857-10140041,10140223-10140294,10140374-101404...    28   6.8  
03_01_0252 - 1963884-1963937,1964030-1964213,1964347-1964423,196...    28   6.8  

>04_01_0257 + 3407201-3407291,3407522-3407628,3407812-3407889
          Length = 91

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 275 VNITGLVSLRCKVNCFSVGRSLFLLISH 192
           VNI GLV + C + C S G+S+ +L+ H
Sbjct: 49  VNINGLVPVPCNIFCPSKGKSITVLLIH 76


>05_05_0122 - 22533212-22533375,22533658-22533763,22533878-22533916
          Length = 102

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +1

Query: 58  CVKLTRRYSSVNASVT*TIWRELENK 135
           C++   +++++N  VT T+W+ELE +
Sbjct: 31  CMEALEKHANINPVVTSTVWKELEKE 56


>07_03_0431 -
           18152041-18152085,18152368-18152685,18152927-18153482,
           18153886-18154577,18155234-18155614,18156159-18156241,
           18156618-18156786,18157498-18157543,18158301-18158389,
           18158476-18158591,18159137-18159443
          Length = 933

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 437 NLKHTLHGRCIQEVYRKIKLDDAREXGDRRF*EVNERLDNYFKKS*XWSVDEDLQR 604
           N K    GR +QE + K+K+    E     +    E   N+F++   W +D+DL+R
Sbjct: 123 NWKKKKDGRTVQEAHEKLKI--GNEERVHVYYARGEDDPNFFRRC-YWLLDKDLER 175


>05_03_0209 +
           10139857-10140041,10140223-10140294,10140374-10140445,
           10141095-10141166,10141427-10141498,10141628-10141663,
           10141958-10142029,10142107-10142181,10142449-10142514,
           10142610-10142675,10142748-10142792,10142882-10142946,
           10143066-10143445,10143530-10143728,10143801-10143959,
           10144042-10144160,10144294-10144504,10145336-10145567,
           10145650-10145800,10145899-10146162
          Length = 870

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1

Query: 368 GTNAPFITSLTGSSKPITFANP*TSLITTSLVNITGLVSLRCKVNCFSVG 219
           G   PFI   T         NP + L+   L N+T LVSL    N F+ G
Sbjct: 71  GPIPPFIGKFTSMQYLSLSLNPLSGLLPKELGNLTNLVSLGIGSNNFTGG 120


>03_01_0252 -
           1963884-1963937,1964030-1964213,1964347-1964423,
           1964629-1964799,1964984-1965160,1965303-1965932
          Length = 430

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 311 ANP*TSLITTSLVNITGLVSLRCKVNCFS 225
           ANP   L T S + + GL   +C V+CFS
Sbjct: 288 ANPGVLLSTVSALEVLGLEIEQCVVSCFS 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,929
Number of Sequences: 37544
Number of extensions: 198852
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)