Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A15
         (888 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q384Y2 Cluster: Putative uncharacterized protein; n=1; ...    36   1.8  
UniRef50_Q22SU3 Cluster: Putative uncharacterized protein; n=1; ...    34   4.2  
UniRef50_A5FES3 Cluster: ATPase AAA-2 domain protein; n=1; Flavo...    33   9.7  
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela...    33   9.7  

>UniRef50_Q384Y2 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 177

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 22/100 (22%), Positives = 37/100 (37%)
 Frame = -1

Query: 336 LSTFILWYSMNLYSAVFELHCTLTVLIFLINLISHFLSRNQYQFF*NRF*H*HRSFTSVY 157
           L TF  W     ++  F   C   +L+F ++L+        + FF   F         ++
Sbjct: 30  LHTFFSWLFFFPFTISFVFCCFCCLLLFFLSLLCFLFFEVFFSFFPLFFLK-FLHIMGIF 88

Query: 156 GSYHCIAYFMHFLVLQYESCHAISSGFCDKSMCKMRYYCC 37
           G Y C  +F    ++     +   S  C  + C   YY C
Sbjct: 89  GFYLCFLFFFIIFIITLNFVYYCFSFVCFVTFCCSHYYHC 128


>UniRef50_Q22SU3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 378

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 346 YSCPVYFYFMVLYESVFSRFRIALYTNCFNIPN*F 242
           Y CP+YF  M LY  ++ R    +Y+ CFN+ N F
Sbjct: 54  YYCPIYFLLMALYYFIWWR-NNQIYSPCFNLYNFF 87


>UniRef50_A5FES3 Cluster: ATPase AAA-2 domain protein; n=1;
           Flavobacterium johnsoniae UW101|Rep: ATPase AAA-2 domain
           protein - Flavobacterium johnsoniae UW101
          Length = 819

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +2

Query: 311 EYHKIKVDRTTVXXXXXICM*LMWQVPAQSTMPESSENSTVYNISTLKLVLEMYVNYNRP 490
           E+HKI++D  T+     +    +     + ++PES+ N   + +S LK   E ++N  + 
Sbjct: 353 EHHKIQIDDETISESIRLSRRYL----KEKSLPESAINLIDHTMSVLKTSGETFLNEKQS 408

Query: 491 IINASN 508
           IIN  N
Sbjct: 409 IINRLN 414


>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
           Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
           - Celatoblatta vulgaris
          Length = 134

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -1

Query: 318 WYSMNLYSAVFELHCTLTVLIFLINLISHFLSRNQYQFF*NRF*H*HRSFTSVYGSYHCI 139
           WYSMN    + + HC         N +   L+ NQ  ++ N F +     +S+ G+ + I
Sbjct: 21  WYSMNRLPTLSKSHCPCWSFSSFSNFLITLLTYNQLMYYLNEFHYLLAGVSSILGAVNFI 80

Query: 138 AYFM 127
           +  M
Sbjct: 81  STIM 84


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,515,128
Number of Sequences: 1657284
Number of extensions: 14707548
Number of successful extensions: 28149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28142
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)