Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A15
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419...    30   2.1  
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886...    29   3.7  

>06_03_1338 -
           29440373-29440534,29440993-29441083,29441799-29441942,
           29442094-29442159,29442589-29442729,29443077-29443178,
           29443264-29443338,29443469-29443549,29443670-29443739,
           29444063-29444139,29444392-29444660
          Length = 425

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 627 IVAVLDNRSFTNNTIGIMLYEYIE--PEHCNNMAFYFLYKEKIE*IGRKSSRH 779
           +VA +D R+F   TIG M+ +  +     CNN+A Y    E+I  +G+ +  H
Sbjct: 184 LVACIDYRNFPQGTIGDMVEDASQGIAFVCNNIASYGGDPERIYLVGQSAGAH 236


>01_06_0036 +
           25786530-25786756,25788000-25788076,25788538-25788625,
           25788706-25788786,25788866-25788940,25789048-25789149,
           25789589-25789726,25791559-25791585,25791696-25791786,
           25792423-25792584
          Length = 355

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 627 IVAVLDNRSFTNNTIGIMLYEYIE--PEHCNNMAFYFLYKEKIE*IGRKSSRH 779
           IVA +D R+F   TIG M+ +  +     CNN+A Y     +I  +G+ +  H
Sbjct: 176 IVACIDYRNFPQGTIGDMVSDASQGISYVCNNIASYGGDPNRIYLVGQSAGAH 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,408,601
Number of Sequences: 37544
Number of extensions: 354330
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)