Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A15
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -1

Query: 345 TVVLSTFILWYSMNLYSAVFELHCTLTVLIFLINLISH 232
           T++LST +  +S+ L+ +    HCT   LIF I+L+S+
Sbjct: 686 TMILSTAVFLFSLELFPSG---HCTDCTLIFPISLLSN 720


>U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical
           protein C02G6.3 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 425 NSH*TLASLTELVLATLITYKLTIIVIQLSCLLLFYGTL 309
           NSH   +SL+E  ++    +  TI++I L+ ++ F+G +
Sbjct: 60  NSHMNTSSLSEEPISNTSQFNETILLITLTLMIFFFGCI 98


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 645 YLKQPQYV-CFHNNFHFVIIDFRVCRSSRLQSITTNIFLTNS 523
           YL+ P++   FH N H  +I+ +     +L+ I   + L NS
Sbjct: 43  YLEWPEWCQVFHGNLHLRMINLKTANFEKLREIRGTLSLINS 84


>Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical
           protein F13G11.2 protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 645 YLKQPQYV-CFHNNFHFVIIDFRVCRSSRLQSITTNIFLTNS 523
           YL+ P +   FH N H  +I+ +     +L+ I   + L NS
Sbjct: 45  YLEWPNWCQVFHGNLHLRVINLKAANFEKLREIRGTLSLINS 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,350
Number of Sequences: 27780
Number of extensions: 382793
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)