Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A15
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 230 FYRATNTSSSEIAFNINTAHSLRFMVVTIVLPTL 129
           FY   +    +I FNI       F  V I++P +
Sbjct: 223 FYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 256


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 230 FYRATNTSSSEIAFNINTAHSLRFMVVTIVLPTL 129
           FY   +    +I FNI       F  V I++P +
Sbjct: 223 FYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 256


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -2

Query: 230 FYRATNTSSSEIAFNINTAHSLRFMVVTIVLPTL 129
           FY   +    +I FNI       F  V +++P +
Sbjct: 219 FYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCM 252


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 230 FYRATNTSSSEIAFNINTAHSLRFMVVTIVLP 135
           +Y       S+I FNI       F  V +++P
Sbjct: 228 YYPCCTEPYSDITFNITMRRKTLFYTVNLIIP 259


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 740 GKNRINWTKIKQTSGSEAKMATFVNNRKTF*KYCLLAYXES 862
           GKN   + + +  SGS  K+A   N  + F +Y ++   E+
Sbjct: 328 GKNLFEFIRKQVLSGSTGKVAFDDNGDRIFAEYDIINIQEN 368


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -2

Query: 230 FYRATNTSSSEIAFNINTAHSLRFMVVTIVLP 135
           FY        +I FNI       F  V +++P
Sbjct: 215 FYICCEEPYPDIVFNITLRRKTLFYTVNLIIP 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,059
Number of Sequences: 438
Number of extensions: 5271
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)