Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A14
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...   119   6e-28
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...   114   2e-26
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   1.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.8  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.7  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   7.7  

>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score =  119 bits (286), Expect = 6e-28
 Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 4/175 (2%)
 Frame = +1

Query: 157 LQNQWSLWFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQG 333
           LQ++W+LWF     +   W + L E+ +F TVE+FW ++  I   S L    DY+ F +G
Sbjct: 66  LQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKG 125

Query: 334 IRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICGAVVNVR 510
           IRP WED  N  GG+W  + + K + ++LD  WL +VL  IGE  +    E+ G V N+R
Sbjct: 126 IRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMR 183

Query: 511 PKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSATK 669
               +IA+WT +   +    +IG + KE LGI  K  I +  H D+    S   K
Sbjct: 184 KGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYSAHEDSSKAGSMRAK 238


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score =  114 bits (274), Expect = 2e-26
 Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 4/187 (2%)
 Frame = +1

Query: 136 NF*SSTRLQNQWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHD 312
           NF     L   W+LWF         W E    + TF++VE+FW ++++I   S L    D
Sbjct: 33  NFNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSD 92

Query: 313 YAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEIC 489
           Y+ F++G+RP WED  NK GG+W     K +    LD  WL  VL  IGE  +    E+ 
Sbjct: 93  YSFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVM 151

Query: 490 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTMVKHSSA 663
           G V+N+R    ++A+WT     +   +EIG + K+ L +     I F  H D+    S+ 
Sbjct: 152 GVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAHEDSSKSGSTR 211

Query: 664 TKNLYTV 684
            K   +V
Sbjct: 212 AKTRMSV 218


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 603 DTRQDW-FPSTQRH-NG*A*FCDQESIHCLVLAL 698
           D  Q+W FP TQ++ N    FC+Q   H L+LAL
Sbjct: 98  DAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLAL 131


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 27/99 (27%), Positives = 46/99 (46%)
 Frame = -2

Query: 497  TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 318
            T+P +S    + S I   +TSN N+  S    F S + +        +S+ I +   LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856

Query: 317  A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 201
              S  W +S    + +YN   SSTV    ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 334 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 444
           +  +WE   N   G +L   +EKK  F  +DR+W  V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 143 DQAPXYKTSGVSGFTT---MTETKHGRRILL 226
           D AP Y  + VSG  T   + ET+H R IL+
Sbjct: 362 DPAPLYSFTRVSGIVTYMKIFETEHSRSILV 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,372
Number of Sequences: 5004
Number of extensions: 68240
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)