Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A13
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224...    54   1e-07
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310...    31   1.1  
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068...    29   4.5  
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757...    29   4.5  
06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780...    29   5.9  

>01_05_0484 -
           22621614-22621676,22621798-22621911,22622006-22622453,
           22623052-22623179,22623747-22623821,22623954-22624040
          Length = 304

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/77 (32%), Positives = 41/77 (53%)
 Frame = +3

Query: 174 MVVFTCSHCGESVQXPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 353
           MV F C  CG+ ++ PK+  H+ +    +   LSC+DC + F  +  + H +CI+E E+Y
Sbjct: 1   MVWFQCEDCGDDLKKPKLAGHFRSCSAYR---LSCIDCGEFFTQETVQGHTQCISEAEKY 57

Query: 354 SGKGFTAKEKKGEKKQN 404
             KG        + KQ+
Sbjct: 58  GPKGQNKASNNAQGKQD 74


>01_05_0485 -
           22628999-22629325,22630340-22630450,22630888-22631034,
           22631283-22631337,22631761-22632134,22632926-22633000,
           22633419-22633670
          Length = 446

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 270 LSCMDCFKDFLGKDYESHIKCITEEERY 353
           LSC+DC + F  +  + H +CI+  E+Y
Sbjct: 85  LSCIDCGESFSQETVQGHAQCISGAEKY 112


>06_03_0815 -
           24905641-24905874,24905974-24906044,24906678-24906847,
           24906862-24906955,24907904-24907948,24908599-24909631
          Length = 548

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 124 HFAFXTNSPNSHVFYKKWLFLHAVIVGSLFRXPKWKSIISLNVGIKIQ 267
           H+A   NS   H+ +  ++ + A +  SLF+ P     I + V  + Q
Sbjct: 461 HYANFPNSVRKHILFVIFVLMDAEVRNSLFKEPVLHDAIKIGVNFRNQ 508


>02_05_0672 +
           30775458-30775523,30775594-30775662,30775748-30775797,
           30775869-30775929,30776016-30776381,30776542-30776754,
           30776826-30777056,30777502-30777615,30777703-30778495,
           30778535-30778905,30779007-30779378,30779448-30780438,
           30781068-30781141,30781953-30782030,30782448-30782525
          Length = 1308

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = +1

Query: 385 RVRKNKMLGSRCCSQF*MSKKVHLKMYVG--LLRQ*ASITIH--HERSLSLLILSKMSVD 552
           +VR +KM+GS+C  +F M+  + L+      LL++ + I +   HERSL+  IL  M   
Sbjct: 326 QVRHDKMVGSKCSIKF-MTDGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSR 384

Query: 553 IKLIQKTL 576
           I  I+K+L
Sbjct: 385 IIKIRKSL 392


>06_03_0083 +
           16374830-16374922,16375917-16375974,16377893-16378089,
           16378176-16378292,16378437-16378497,16378603-16378691,
           16378808-16378882,16378992-16379080,16379203-16379252,
           16379539-16379699,16380004-16380132,16380548-16380928
          Length = 499

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = +1

Query: 133 FXTNSPNSHVFYKKWLFLHAVI-VGSLFRXPKWKSIISLNVGIKIQICHVWTVSKIF*EK 309
           F  N P+  +F+      HA   +   F    W SI+ + VGI +Q+   +    ++   
Sbjct: 312 FWFNRPDWVLFFIHLTLFHATPGLKKCFHENIWLSIVEVIVGISLQVLCSYITFPLY--A 369

Query: 310 IMNRISSALLK---KKDTLEKVSQLRRKRVRKNKM 405
           ++ ++ S + K   ++ T++ +   R+K + K K+
Sbjct: 370 LVTQMGSNMKKTIFEEQTMKALMNWRKKAMEKKKV 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,263,052
Number of Sequences: 37544
Number of extensions: 317613
Number of successful extensions: 858
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)