Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_A12
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 281 1e-76
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 280 1e-76
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 1.8
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 4.3
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 5.6
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 5.6
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 5.6
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.8
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 9.8
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 281 bits (688), Expect = 1e-76
Identities = 125/204 (61%), Positives = 161/204 (78%)
Frame = +3
Query: 42 KXSAPRXGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 221
K PR GS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 5 KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64
Query: 222 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 401
SK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+
Sbjct: 65 SKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFK 124
Query: 402 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 581
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ
Sbjct: 125 SKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQ 182
Query: 582 LNGGTIEDKVKWAREHLEKPIPVR 653
+NGG++ DKV+WAREH EK + ++
Sbjct: 183 VNGGSVADKVEWAREHFEKTVDIK 206
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 655 SVFAQXEMIDCIXXXXXXXXXXXXSRWHTXNLPRKTHKGL-KESCL 789
S F Q EMID I +RW T LPRKTH+GL K +C+
Sbjct: 207 STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI 252
Score = 32.3 bits (70), Expect = 0.086
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 752 PVRHTRVLRKVACIGPWHP 808
P + R LRKVACIG WHP
Sbjct: 239 PRKTHRGLRKVACIGAWHP 257
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 280 bits (687), Expect = 1e-76
Identities = 124/204 (60%), Positives = 161/204 (78%)
Frame = +3
Query: 42 KXSAPRXGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 221
K PR GS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 5 KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64
Query: 222 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 401
SK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+
Sbjct: 65 SKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFK 124
Query: 402 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 581
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ
Sbjct: 125 SKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQ 182
Query: 582 LNGGTIEDKVKWAREHLEKPIPVR 653
+NGG++ DKV+WAREH EK + ++
Sbjct: 183 VNGGSVADKVEWAREHFEKTVDIK 206
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 655 SVFAQXEMIDCIXXXXXXXXXXXXSRWHTXNLPRKTHKGL-KESCL 789
S F Q EMID I +RW T LPRKTH+GL K +C+
Sbjct: 207 STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI 252
Score = 32.3 bits (70), Expect = 0.086
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 752 PVRHTRVLRKVACIGPWHP 808
P + R LRKVACIG WHP
Sbjct: 239 PRKTHRGLRKVACIGAWHP 257
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +3
Query: 3 ILDCDCLPACRTVKXSAPRXGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYK 179
IL + P C K R S +P + G K FP D+P S P+ + G
Sbjct: 284 ILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGED 343
Query: 180 AGMTHVVREPDRPGSKI 230
T ++ P++ +I
Sbjct: 344 VNFTVALKVPEKSNKEI 360
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 304 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 456
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 662 NTESNRDRFLQMFSGPFHFVLDGTTVKLDFHN 567
N ESN RF+++FS ++ TV++++ N
Sbjct: 91 NIESNAKRFVELFSQCADALMPPPTVEINYRN 122
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 498 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 608
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 206 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPXTGC*XF 42
F N VG G+I D S + +R+VF D +G L ++SH T F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 461 FASKLILPFLTGFSESLLLAFVPVFVEATST 369
F SKL L + F E + LAF+ F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 570 MEIQLNGGTIEDKVKWAREH 629
M +Q G TI KW REH
Sbjct: 46 MPVQYKGQTISASHKWTREH 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,657
Number of Sequences: 5004
Number of extensions: 68227
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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