Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A12
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   266   1e-71
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   263   1e-70
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.1  
05_04_0324 - 20273797-20274261                                         29   4.5  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  266 bits (652), Expect = 1e-71
 Identities = 121/204 (59%), Positives = 155/204 (75%), Gaps = 1/204 (0%)
 Frame = +3

Query: 42  KXSAPRXGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 221
           K   PR GS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PG
Sbjct: 5   KFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPG 64

Query: 222 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 401
           SK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW  
Sbjct: 65  SKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCK 124

Query: 402 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEI 578
                       +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K  +QKKAH+MEI
Sbjct: 125 SKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEI 184

Query: 579 QLNGGTIEDKVKWAREHLEKPIPV 650
           Q+NGGTI DKV +  +  EK IPV
Sbjct: 185 QINGGTIADKVDYGYKFFEKEIPV 208



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 652 DSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXNLPRKTHKGL-KESCL 789
           D+VF + EMID I            +RW    LPRKTH+GL K +C+
Sbjct: 209 DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255



 Score = 32.3 bits (70), Expect = 0.48
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 752 PVRHTRVLRKVACIGPWHP 808
           P +  R LRKVACIG WHP
Sbjct: 242 PRKTHRGLRKVACIGAWHP 260


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  263 bits (645), Expect = 1e-70
 Identities = 120/204 (58%), Positives = 154/204 (75%), Gaps = 1/204 (0%)
 Frame = +3

Query: 42  KXSAPRXGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 221
           K   PR GS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PG
Sbjct: 5   KFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPG 64

Query: 222 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 401
           SK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW  
Sbjct: 65  SKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCK 124

Query: 402 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEI 578
                       +  + G+K I+   +KM +Y SVVRVI HTQ++ +K  +QKKAH+MEI
Sbjct: 125 SKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEI 184

Query: 579 QLNGGTIEDKVKWAREHLEKPIPV 650
           Q+NGGTI DKV +  +  EK IPV
Sbjct: 185 QINGGTIADKVDYGYKFFEKEIPV 208



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 652 DSVFAQXEMIDCIXXXXXXXXXXXXSRWHTXNLPRKTHKGL-KESCL 789
           D+VF + EMID I            +RW    LPRKTH+GL K +C+
Sbjct: 209 DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255



 Score = 32.3 bits (70), Expect = 0.48
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 752 PVRHTRVLRKVACIGPWHP 808
           P +  R LRKVACIG WHP
Sbjct: 242 PRKTHRGLRKVACIGAWHP 260


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 464 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 580
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 123 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 296
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 297 VGYIETPHGLRAL 335
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,922,144
Number of Sequences: 37544
Number of extensions: 482433
Number of successful extensions: 1038
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)