Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A10
         (845 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q182U3 Cluster: Putative response regulator; n=2; Clost...    35   3.0  
UniRef50_A1IGG0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_Q2KDG4 Cluster: Hypothetical conserved protein; n=1; Rh...    33   9.0  

>UniRef50_Q182U3 Cluster: Putative response regulator; n=2;
           Clostridium difficile|Rep: Putative response regulator -
           Clostridium difficile (strain 630)
          Length = 248

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -3

Query: 843 FITHSFIEIVIXVDWVCISITH*SILETKNVSVGFILIYS--SIWKIGF---LSLQTSAK 679
           FI    +EI       CI I H   ++ KN    F  IYS  S+WKI F   +  +TS  
Sbjct: 112 FILKHDMEIAESKIKACIKIAHKRYIKEKNYRSNFFTIYSDFSLWKISFDEVIYFETSTI 171

Query: 678 SHFI*KIQTS 649
            H I  + TS
Sbjct: 172 PHKIKLVTTS 181


>UniRef50_A1IGG0 Cluster: Putative uncharacterized protein; n=1;
           Enterococcus faecium|Rep: Putative uncharacterized
           protein - Enterococcus faecium (Streptococcus faecium)
          Length = 87

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 419 LIINTKILVFNK*KNNIVELIIQVGLRVLIYFV 517
           LIINT I++FNK +N  +  I  + L + +YF+
Sbjct: 55  LIINTLIIIFNKHRNLFLHSIFPIVLLIFLYFI 87


>UniRef50_Q2KDG4 Cluster: Hypothetical conserved protein; n=1;
           Rhizobium etli CFN 42|Rep: Hypothetical conserved
           protein - Rhizobium etli (strain CFN 42 / ATCC 51251)
          Length = 270

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = -3

Query: 192 RNPARYTWRGRIVRRAYF*SRLVEASWSRVAHVHTLPAGTSTARHXRRTGRSRSLS 25
           R P R+   GR + R+   +RL E   +R  H+   PAG+S A   R   RSRS S
Sbjct: 205 RQPCRFA-AGRSMGRSMQ-ARLPEGGCARPFHIMPSPAGSSCAGSRRTAARSRSTS 258


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,331,889
Number of Sequences: 1657284
Number of extensions: 16613818
Number of successful extensions: 34749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34723
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)