Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A10
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   2.5  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    27   4.4  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   7.7  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    26   7.7  

>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 69  C*CPRVKCVRVLLDSRRLPRADSKNTRVERSARAMYSAPDYVTARGTVLPLSNIWNV 239
           C  P     R  +++  L  ++SK  R+    +AM  APD  T  G  +    +W V
Sbjct: 634 CIIPMGTVTRRAVENTWLTASNSKKNRLGSELKAMIRAPDGYTFVGADVDSEELWIV 690


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 132 DSKNTRVERSARAMYSAPDYVTARGTVLPL 221
           D ++ R+ RS    Y+ PDY  ARG   P+
Sbjct: 2   DLEHKRISRSTLPDYADPDYFEARGERNPV 31


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/93 (22%), Positives = 38/93 (40%)
 Frame = +3

Query: 87  KCVRVLLDSRRLPRADSKNTRVERSARAMYSAPDYVTARGTVLPLSNIWNVHVNESKKHL 266
           K + +L   R+  +   +N    RS          V  +  V+ + N + +H  E    +
Sbjct: 388 KLIGILNRFRKSVQRQEENYVNTRSTILSVKIHHIVVQKLNVITVLNNYGIHNEERLSIV 447

Query: 267 *KEYSLVNKHTFFEHVHYTLYPVHYRLTNKIVV 365
            K      K TFF+ ++   Y V+   T K+V+
Sbjct: 448 FKPLGASPKDTFFDIINNQKYVVNTDGTLKVVI 480


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 93  VRVLLDSRRLPRADSKNTRVERSARAMYSAPDYVTARGTVLPL--SNIWNVHVNESK 257
           V+ + ++ R  ++ SKN  +E+  +      DY+ A G +  +   N+ +++V+E +
Sbjct: 106 VQTMQETARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEVLGQNMTDINVDEEE 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,009
Number of Sequences: 5004
Number of extensions: 75612
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)