Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A08
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    75   6e-15
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    73   2e-14
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    28   0.67 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.6  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   2.7  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    25   8.3  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   8.3  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   8.3  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 74.9 bits (176), Expect = 6e-15
 Identities = 34/73 (46%), Positives = 53/73 (72%)
 Frame = +3

Query: 144 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 323
           V+DK  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 324 VVQHHGQVIYTRA 362
           V QH  Q IYTRA
Sbjct: 72  VDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 33/72 (45%), Positives = 52/72 (72%)
 Frame = +3

Query: 144 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 323
           V+DK  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 324 VVQHHGQVIYTR 359
           V QH  Q IYTR
Sbjct: 72  VDQHSKQAIYTR 83


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 192 HMWVYQTTPGCSTCHELFLWTXSSSWLCRHRILPSSSV 79
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 73  KKHRRRRKDPVAAKPRRRXGPKEKFVTS*TTRC 171
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 335 MLDYLFDETFFPKLDECSSR 276
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 32  PPXQGREGFGQTASKNTEEEGRIRWRQSQEEEXVQRKSS 148
           PP   R   G+   K   EE +  W++++EE+  + K +
Sbjct: 110 PPAWFRREMGEW--KKAREEDKAEWKKAREEDKAEWKKA 146


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 394 IVYATGSSPLVARV*ITCP*CWTTCLMRP 308
           I+Y T ++P++  + +T   CW   L  P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 246 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 353
           +ERL +  ++ R AL+EL++  LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,171
Number of Sequences: 5004
Number of extensions: 30602
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)