Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A08
         (495 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   170   8e-43
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   170   8e-43
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   170   8e-43
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   165   2e-41

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  170 bits (414), Expect = 8e-43
 Identities = 85/114 (74%), Positives = 90/114 (78%)
 Frame = +3

Query: 36  PXKDAKASAKQPQKTQXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEVP 215
           P KDAK+SAKQPQKTQ                    VRDKLNNQVLFDK TYEKLYKEVP
Sbjct: 3   PKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVP 62

Query: 216 QYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
            YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 63  AYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  170 bits (414), Expect = 8e-43
 Identities = 85/114 (74%), Positives = 90/114 (78%)
 Frame = +3

Query: 36  PXKDAKASAKQPQKTQXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEVP 215
           P KDAK+SAKQPQKTQ                    VRDKLNNQVLFDK TYEKLYKEVP
Sbjct: 3   PKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVP 62

Query: 216 QYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
            YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 63  AYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  170 bits (414), Expect = 8e-43
 Identities = 85/114 (74%), Positives = 90/114 (78%)
 Frame = +3

Query: 36  PXKDAKASAKQPQKTQXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEVP 215
           P KDAK+SAKQPQKTQ                    VRDKLNNQVLFDK TYEKLYKEVP
Sbjct: 3   PKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVP 62

Query: 216 QYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
            YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 63  AYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  165 bits (402), Expect = 2e-41
 Identities = 83/112 (74%), Positives = 88/112 (78%)
 Frame = +3

Query: 42  KDAKASAKQPQKTQXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEVPQY 221
           KDAK+SAKQPQKTQ                    VRDKLNNQVLFDK TYEKLYKEVP Y
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 60

Query: 222 KLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
           KLITP+VVSERLK+RGSL +RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  KLITPSVVSERLKIRGSLDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,162,503
Number of Sequences: 53049
Number of extensions: 359036
Number of successful extensions: 1064
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)