Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_A06
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 29 0.61
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual 29 1.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 28 1.8
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 28 1.8
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 28 1.8
SPCC338.06c |||heat shock protein Hsp20 family|Schizosaccharomyc... 28 1.8
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 27 3.2
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 27 3.2
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 27 4.3
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 26 5.6
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 26 7.5
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 26 7.5
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 26 7.5
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 9.9
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 25 9.9
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 25 9.9
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 9.9
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 29.5 bits (63), Expect = 0.61
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 523 WQKETELWTQSQLQKEKNRFRKFRGFSKVFENATRQICDH 642
WQK S E RF K G ++ EN Q C H
Sbjct: 599 WQKLNSFGITSSFYNEIERFTKSTGIEEITENGILQKCFH 638
>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 517 TEWQKETELWTQSQLQKEKNRFRKFRGFSKVFENATRQICDHRNVGR 657
TEW+K + W QL+ E+ K + NA + I + R GR
Sbjct: 152 TEWKKGFDAWRNEQLKLEQESKLKEALSAASSSNARKAILEKRMTGR 198
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 329 SYVYCPYCNKAWKGWDINSYKEHPNHHGEPLSYRGVYIHLDF 454
S VY P CN+ W D N +E E + Y ++ L F
Sbjct: 145 SEVYVPPCNRVWYSDDTNEVEEKGIRPSE-VRYANIFSKLSF 185
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 504 LGITHRVAEGNRTMDPKSTSKRKKSFPEISRVF 602
L ITHR + T D STS KK+F +F
Sbjct: 80 LSITHRENHSSGTADNSSTSPLKKAFLSFISIF 112
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 504 LGITHRVAEGNRTMDPKSTSKRKKSFPEISRVF 602
L ITHR + T D STS KK+F +F
Sbjct: 80 LSITHRENHSSGTADNSSTSPLKKAFLSFISIF 112
>SPCC338.06c |||heat shock protein Hsp20 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 139
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 653 PTFRWSQICLVAFSKTLENPR 591
P RWS+ C+ AFS+T+ P+
Sbjct: 84 PLIRWSERCVGAFSRTITLPQ 104
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 341 CPYCNKAWKGWDI-NSYKEHPNHHGEPLSYR 430
C Y + + WDI N K HP + G+P+SY+
Sbjct: 515 CDYNSDTSRTWDICNPNKLHP-YSGKPVSYK 544
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 644 EMLDGFEVIEQCSLEYDPTKGASIDPHIDDCWVWG 748
E++D + CS+ Y T + DP+ DD +WG
Sbjct: 121 EIIDRHINLSDCSV-YSYTPDSDSDPYGDDALIWG 154
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 330 VTSTVRIATKPGKDGTSILTKNIRTITGN 416
VTS++ I +KP K G+ + NI +G+
Sbjct: 283 VTSSISIVSKPSKKGSKLKISNITLRSGS 311
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 644 EMLDGFEVIEQCSLEYDPTKGASIDPHIDDCW-VWGE 751
E DG+E++ + ++ DPTK D ++ W +W E
Sbjct: 406 EKRDGYEILFEDAIRGDPTKFIRYD-EVEYAWKIWDE 441
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 536 QNYGPKVNFKKKKIVSGNFEGFPKFSKMLQD 628
Q Y K++ ++ KI SG GF SK L D
Sbjct: 288 QEYSAKLSLERDKISSGGSNGF-SLSKTLDD 317
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 440 IHLDFISELEEQILIDNIDEIPWDNSQSGRRKQNYGPKVNFKKK 571
I D+ + L +++E N Q+G YG + N+K K
Sbjct: 167 IFRDYFEFIGTSTLSPSVEEFVCPNPQTGDNGTTYGVEANYKAK 210
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 254 YNLCSRQGLGFILDYSMLHN 195
+N+C ++GL L+ S LHN
Sbjct: 155 FNICDQEGLPIYLESSHLHN 174
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 644 EMLDGFEVIEQCSLEYDPTKGASIDPHIDDCW-VWGERIVTVNFLSDSVLTMTRF 805
E L + I+ S+E P + S H + WGE +V + +SD +M RF
Sbjct: 790 ETLSPYVEIQVHSMEESPFRWCSKVVHENGFRPFWGETMVYESIISDDFYSMIRF 844
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 619 HFRKLWKTLEISGNDFFLFEVDFGS 545
HF K W+ + ++ ++ FLF + GS
Sbjct: 169 HFLKKWENMPMAFSEVFLFNILVGS 193
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 528 EGNRTMDPKSTSKRKKSFPEISRVFQSFRKCYK-TDLRPSKC 650
+GN+T + K+K++ E ++V +SF K + R ++C
Sbjct: 86 KGNKTKKKRKKEKKKETIVEKNKVLKSFALYKKINNYRSTRC 127
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 338 YCPYCNKAWKGWDINSYKEHPN 403
Y PY N + + W+ SY++ P+
Sbjct: 258 YTPYLNDSSEAWEKESYEKSPS 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,123
Number of Sequences: 5004
Number of extensions: 69223
Number of successful extensions: 231
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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