Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A06
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485...    52   7e-07
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792...    33   0.28 
12_02_0636 + 21433109-21433450,21433538-21434089                       29   4.5  
02_05_0391 + 28563242-28563302,28563714-28563931,28564563-285646...    29   4.5  
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407...    29   5.9  
06_03_0592 + 22585546-22588573,22588680-22589032                       28   7.8  
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425...    28   7.8  

>04_04_1056 -
           30447791-30447850,30448020-30448085,30448299-30448583,
           30448744-30448869,30449068-30449154,30449273-30449695
          Length = 348

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
 Frame = +2

Query: 419 LSYRGVYIHLDFISELEEQILIDNIDEIPWDNSQSGRRKQNYGPKVNFKKKKIVSGNFEG 598
           L   G+Y+  DF++  EEQ L+  +D  PW  S + RR Q+YG +  ++ + + S  F G
Sbjct: 123 LGVPGIYLVPDFVTAAEEQELLAAVDNRPW-KSLAKRRVQHYGFEFLYETRNVDSKQFLG 181

Query: 599 -FPKFSKMLQDRFATIEMLD--GFEVIEQCSLEYDPTKGASIDPHIDDCWVWGERIVTVN 769
             P F   + D+  +    +    ++++Q ++   P  G  + PHID    + E I +++
Sbjct: 182 ELPPFVSKIIDKIMSFPGANKCTSKLVDQLTVNEYPC-GVGLSPHIDTHSAFEEMIFSLS 240

Query: 770 FLSDSVLTMTRF 805
                ++   ++
Sbjct: 241 LAGPCIMEFRKY 252


>06_03_0590 +
           22574985-22578018,22578125-22578469,22579171-22579217,
           22579450-22579573,22579622-22579686
          Length = 1204

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -2

Query: 392 LCKN*CPILSRLCCNTDSRRNFFLCLVPTAISGLQHRIVFHRSNTSYNLCSRQGL 228
           LC   C IL  +C  T+  R   LC   + +SG   R +   SNTS N CS  G+
Sbjct: 17  LCTFFCSILLAICNETEYDRQALLCF-KSQLSG-PSRALSSWSNTSLNFCSWDGV 69


>12_02_0636 + 21433109-21433450,21433538-21434089
          Length = 297

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +2

Query: 485 DNIDEIPWDNSQSGRRKQNYGPKVNFKKKKIVSGNFEGFPKFSKMLQDRFATIEMLDGF 661
           + IDE   D+  S +RK+  G KV+ K KK  SG+ +   + SK  +    T+  +  F
Sbjct: 169 NEIDEETEDDEPSAKRKRGGGSKVD-KSKKSKSGSQKMVEEMSKSNELSAQTLSSIQSF 226


>02_05_0391 +
           28563242-28563302,28563714-28563931,28564563-28564637,
           28564730-28565264,28565343-28565523,28565586-28565724,
           28565826-28566067,28566157-28566322,28566591-28566698
          Length = 574

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 197 CAALSNPE*NRDLVGCKGCRT--CLIC 271
           C A      N DL+ C+GCRT  C +C
Sbjct: 533 CGAKRTKSGNNDLLTCRGCRTHYCALC 559


>08_01_0462 +
           4072369-4072630,4072732-4072814,4072937-4073020,
           4073509-4073584,4073712-4073784,4073878-4073951,
           4074158-4074251,4074374-4074443
          Length = 271

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 731 DCWVWGERIVTVNFLSDSVLT 793
           +CW+WG+ + T + + D +LT
Sbjct: 247 ECWLWGQDVRTFSEIQDRILT 267


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 377 CPILSRLCCNTDSRRNFFLCLVPTAISGLQHRIVFHRSNTSYNLCSRQGL 228
           C I   +C  TD R+   LC   + +SG   R++   SNTS N C+  G+
Sbjct: 21  CSISLAICNETDDRQAL-LCF-KSQLSG-PSRVLSSWSNTSLNFCNWDGV 67


>05_04_0288 +
           19839597-19839821,19841882-19842107,19842494-19842582,
           19845184-19845387,19845463-19845717,19845796-19846011,
           19846611-19846766,19846880-19847039,19847702-19847788,
           19847789-19847940,19848006-19848143,19848714-19848788,
           19849166-19849444
          Length = 753

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 440 IHLDFISELEEQILIDNIDEIPWDN 514
           +H+D  S+ E +IL D ID + +DN
Sbjct: 491 VHMDIDSDYERRILNDLIDSVTFDN 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,992,383
Number of Sequences: 37544
Number of extensions: 403382
Number of successful extensions: 1029
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)