Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_A06
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00050-5|AAM22063.1| 291|Caenorhabditis elegans Hypothetical pr... 126 2e-29
U00050-6|AAM22064.1| 208|Caenorhabditis elegans Hypothetical pr... 119 2e-27
AL110485-12|CAE18012.1| 227|Caenorhabditis elegans Hypothetical... 29 3.1
L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of ... 29 4.0
AC006675-12|AAK84548.1| 418|Caenorhabditis elegans Nuclear horm... 29 5.3
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 25 5.8
Z82286-3|CAB05309.1| 781|Caenorhabditis elegans Hypothetical pr... 28 9.3
>U00050-5|AAM22063.1| 291|Caenorhabditis elegans Hypothetical
protein F09F7.7a protein.
Length = 291
Score = 126 bits (304), Expect = 2e-29
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Frame = +2
Query: 239 GCKGCRTCLICETQYGAAXXXXXXXXXXXXS-YVYCPYCNKAWKGWDINSYKEHPNHHGE 415
GCKG R C +CET ++Y A ++NS + E
Sbjct: 9 GCKGARFCALCETTERVKKLRVVEDKHVNYKVFIYDHIRQIAIPTTNLNSQSSLEDIIDE 68
Query: 416 PLSYRGVY----IHLD-------FISELEEQILIDNIDEIPWDNSQSGRRKQNYGPKVNF 562
S + V I +D F+SE EE +++ ID + W SQSGRRKQ+YGPKVNF
Sbjct: 69 STSCQSVSTDGSIEIDGLTLIHNFLSESEESKILNMIDTVEWAQSQSGRRKQDYGPKVNF 128
Query: 563 KKKKIVSGNFEGFPKFSKMLQDRFA--TIEMLDGFEVIEQCSLEYDPTKGASIDPHIDDC 736
K KK+ + F G P+++ ML ++ + ++ L ++ E C+LEY+ K ++I+ H DD
Sbjct: 129 KHKKVKTDTFVGMPEYADMLLNKMSEYDVKKLGNYQPFEMCNLEYEEVKKSAIEMHQDDM 188
Query: 737 WVWGERIVTVNFLSDSVLTMT 799
W+WG R++++N ++ SV+T++
Sbjct: 189 WIWGNRLISINLINGSVMTLS 209
>U00050-6|AAM22064.1| 208|Caenorhabditis elegans Hypothetical
protein F09F7.7b protein.
Length = 208
Score = 119 bits (287), Expect = 2e-27
Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 14/198 (7%)
Frame = +2
Query: 239 GCKGCRTCLICETQYGAAXXXXXXXXXXXXS-YVYCPYCNKAWKGWDINSYKEHPNHHGE 415
GCKG R C +CET ++Y A ++NS + E
Sbjct: 9 GCKGARFCALCETTERVKKLRVVEDKHVNYKVFIYDHIRQIAIPTTNLNSQSSLEDIIDE 68
Query: 416 PLSYRGVY----IHLD-------FISELEEQILIDNIDEIPWDNSQSGRRKQNYGPKVNF 562
S + V I +D F+SE EE +++ ID + W SQSGRRKQ+YGPKVNF
Sbjct: 69 STSCQSVSTDGSIEIDGLTLIHNFLSESEESKILNMIDTVEWAQSQSGRRKQDYGPKVNF 128
Query: 563 KKKKIVSGNFEGFPKFSKMLQDRFA--TIEMLDGFEVIEQCSLEYDPTKGASIDPHIDDC 736
K KK+ + F G P+++ ML ++ + ++ L ++ E C+LEY+ K ++I+ H DD
Sbjct: 129 KHKKVKTDTFVGMPEYADMLLNKMSEYDVKKLGNYQPFEMCNLEYEEVKKSAIEMHQDDM 188
Query: 737 WVWGERIVTVNFLSDSVL 790
W+WG R++ FL VL
Sbjct: 189 WIWGNRLIRYEFLFKKVL 206
>AL110485-12|CAE18012.1| 227|Caenorhabditis elegans Hypothetical
protein Y46G5A.35 protein.
Length = 227
Score = 29.5 bits (63), Expect = 3.1
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Frame = +2
Query: 437 YIHLDFISELEEQILIDNIDEIPWDNSQSGRRKQNYGPKVN-FKKKKIVSGNFEGFPKFS 613
Y+ DFI+E EE+ L+ +++ + K ++ ++ +++++ E S
Sbjct: 33 YVKKDFITEAEEKSLLVDVEP---HMKRLRYEKSHWDDAIHLYREREQRKWRDENLEVIS 89
Query: 614 KMLQDRF-ATIEMLDGFEVIEQCSLEYDPTKGASIDPHIDDCWVWGERIVTVNFLSDSVL 790
++ + F A E L ++ D K I PHID G+ I V+ LSD+++
Sbjct: 90 RIRSESFGANTEHLTYVHIL-------DLHKDGVIKPHIDAIRYCGDVITGVSLLSDAIM 142
Query: 791 TM 796
+
Sbjct: 143 RL 144
>L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of
potassium channelsprotein 7 protein.
Length = 557
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 395 HPNHHGEPLSYRGVYIHLDFISELEEQILIDNIDEIPWDNSQSGRRKQNYGPKV 556
H N+ +Y V + D ELE + D + EIP + RR YG V
Sbjct: 35 HRNNDDYASTYHHVGVEYDSYEELERHEMDDRVTEIPEGFHRRQRRNLIYGDDV 88
>AC006675-12|AAK84548.1| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 99 protein.
Length = 418
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -1
Query: 744 HTQQSSICGSIDAPLVGSYSNEHCSITSKPSNISMVANLSC----SIFENFGK 598
++ S S+D+PLV + S C I KPS+ ++C F FG+
Sbjct: 3 YSSPDSSLSSLDSPLVPTRSMRTCEICDKPSHGKHFGAVTCRACAMFFRRFGR 55
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 24.6 bits (51), Expect(2) = 5.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 804 KRVIVRTESDRKLTVTILSPHTQQSS 727
+R +V + DRKL +L+ H QQ +
Sbjct: 880 RRTLVDVQRDRKLKENLLNLHIQQKT 905
Score = 22.2 bits (45), Expect(2) = 5.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 744 HTQQSSICGSIDAPLVGSYSNEHCSITSKPSNISMVANLSCSIFEN 607
H Q+ G+I+ +N C+I S PS+I+ + + S+ +N
Sbjct: 932 HPLQTCTMGAIEVKRF-CINNGRCTICSSPSHITGNCSYAQSMQDN 976
>Z82286-3|CAB05309.1| 781|Caenorhabditis elegans Hypothetical
protein W02A2.6 protein.
Length = 781
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 307 VGTRQRKKLRLLSVLQQSLERMGHQFLQRTSEPSRGTVELSRRLYSLGL 453
+GT KKL +L Q+L + H ++ E RG+ LY L L
Sbjct: 20 LGTGDSKKLSRREILDQNLPELCHSIIEMVPERHRGSA-TKTGLYLLSL 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,090,581
Number of Sequences: 27780
Number of extensions: 384234
Number of successful extensions: 1231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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