Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_A06
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.85 
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   1.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.0  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   7.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -1

Query: 765 TVTILSPHTQQSSICGSIDAPLVGSYSNEHCSITSKPSNISMVANLSCSI 616
           T T ++ + Q  S  G+++  ++   + +  S T  P N    ANL C +
Sbjct: 558 TYTCVARNAQGYSARGTLEVQVMVPPTIQQFSFTKLPMNAGEFANLQCIV 607


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 291 AAPYCVSQIKHVLQPLQPTRSRFHSGLLNAAQLN 190
           ++PY V+Q+ H L P  PT     S      +LN
Sbjct: 2   SSPYHVAQLPHHLSPNMPTMDSTVSSAKPEPELN 35


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 101 ETCCEISVLTIVFFLIYS*FVVYRFLAH 18
           ET   +SVLTIV F I     +Y  L H
Sbjct: 115 ETSSYVSVLTIVAFSIERYLAIYHPLRH 142


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 696 GSYSNEHCSITSKPSNISMVANLSCSIF 613
           GSY  E C +T+     S+ A   C++F
Sbjct: 517 GSYFGEICLLTNARRVASVRAETYCNLF 544


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 696 GSYSNEHCSITSKPSNISMVANLSCSIF 613
           GSY  E C +T+     S+ A   C++F
Sbjct: 485 GSYFGEICLLTNARRVASVRAETYCNLF 512


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 564 KRKKSFPEISRVFQSFRKCYKTDLRPSKCWT 656
           +RKKS  ++  +       YK++L+  KC T
Sbjct: 125 RRKKSLDDVKILRNDRIDSYKSNLKCDKCST 155


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 644 RWSQICLVAFSKTLEN 597
           +WS++C+V   K  EN
Sbjct: 52  KWSKVCIVVRRKLEEN 67


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 371 ILSRLCCNTDSRRNFFLCL 315
           +L RL C  D++ N  +CL
Sbjct: 279 LLVRLACMFDAQTNSMICL 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,888
Number of Sequences: 438
Number of extensions: 4633
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)