Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_A02
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 218 3e-57
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 116 3e-38
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 30 1.7
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 29 2.2
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 29 3.9
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 3.9
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 5.2
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 27 9.1
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 218 bits (532), Expect = 3e-57
Identities = 103/143 (72%), Positives = 119/143 (83%)
Frame = +3
Query: 135 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRW 314
VHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQGRW
Sbjct: 26 VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGRW 85
Query: 315 PKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 494
P KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPYMSSP
Sbjct: 86 PVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSP 145
Query: 495 CHIEVCLSEREDAVARVAPTDDA 563
CHIEV L+E+ED V++ PTDDA
Sbjct: 146 CHIEVILAEKEDVVSK--PTDDA 166
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 116 bits (278), Expect(2) = 3e-38
Identities = 56/75 (74%), Positives = 63/75 (84%)
Frame = +3
Query: 339 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 518
L LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66 LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125
Query: 519 EREDAVARVAPTDDA 563
E+ED V++ PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138
Score = 60.5 bits (140), Expect(2) = 3e-38
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 135 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 254
VHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 26 VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -3
Query: 636 LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 475
L+S + F + A+ +A ++L H+ L HL + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 129 RFEPRALQDFDRVIRLPRVTTHY 61
R P A+QD D+V++ R THY
Sbjct: 1024 RLSPSAIQDLDKVLKKIRAKTHY 1046
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 260 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 135
AV A W L +F+ + FE+ NS + S CHC +C +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +3
Query: 312 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 473
W K+ + LL AE++ + D+D++V I + P L R +R +G
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547
Query: 474 NPYMSSPCHIEVCLSER 524
NP+ SPC ++ S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -3
Query: 501 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 373
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 236 TLFLFNHVFEVTNSTTERHLSDCH-CGLICVLKVNNGGLNHELCRISTGLSGSR 78
T FL +FEV++ H+ C+ CGLI V + + CR T +S R
Sbjct: 1106 TQFLRERLFEVSDPY---HVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVR 1156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,889,608
Number of Sequences: 27780
Number of extensions: 311484
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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