Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P24
         (473 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DZB4 Cluster: Putative uncharacterized protein; n=1; ...    34   1.8  
UniRef50_Q4FV26 Cluster: Putative uncharacterized protein; n=2; ...    31   9.8  
UniRef50_Q240V5 Cluster: Putative uncharacterized protein; n=1; ...    31   9.8  

>UniRef50_A5DZB4 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 459

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 153 KQEIAFGPGHCDR*L*NNFFLKSIDFLIWLGLRPILLKSHFTDISIRKIP 302
           KQ+I     H +R L  + F   +  + +LGL PIL+  HFT +   ++P
Sbjct: 321 KQKITIPNSHKERNLNTHLFFGFVGLICFLGLWPILIILHFTGVEEFELP 370


>UniRef50_Q4FV26 Cluster: Putative uncharacterized protein; n=2;
           Psychrobacter|Rep: Putative uncharacterized protein -
           Psychrobacter arcticum
          Length = 380

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -2

Query: 340 LYAIGLLAINSMLGILRMEISVKWDFNKIGLKPNQIRKSIDFKKKLFYN 194
           ++ +G+L I S + +L + +   W      +K + +RKS++F  + FYN
Sbjct: 310 VWLVGILVIISSIAVLLLSVFAGWQ-----MKISHLRKSLNFGNEAFYN 353


>UniRef50_Q240V5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 361

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +3

Query: 9   HKKILNYSYXNLIKF*KKIV*VYSF 83
           HK+I+NYS+ NLIKF + ++ V +F
Sbjct: 159 HKQIINYSFENLIKFIEYVLRVKNF 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,072,823
Number of Sequences: 1657284
Number of extensions: 7489265
Number of successful extensions: 15902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15894
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)