Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P23
         (397 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   7.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           20   7.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 90  YSRFRLG*CSQKRCYRSCRRPEC 158
           Y R +   C  K+C     RPEC
Sbjct: 235 YMRRKCQECRLKKCLSVGMRPEC 257


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 349 LQLHHGKWH 375
           L LHH  WH
Sbjct: 203 LNLHHWHWH 211


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 288 CRRKCDRIPRSPQRRVAT 341
           C+RK   +P  PQ++ A+
Sbjct: 69  CKRKIQFMPYGPQQQPAS 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,682
Number of Sequences: 336
Number of extensions: 1994
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)