Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_P21
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 364 e-102
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 68 2e-12
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 56 4e-09
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 33 0.047
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.33
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 1.0
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 27 3.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.4
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.4
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 9.4
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 9.4
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 364 bits (896), Expect = e-102
Identities = 177/220 (80%), Positives = 197/220 (89%)
Frame = -1
Query: 794 DXIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPAD 615
D IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKKGSITSVQA+YVPAD
Sbjct: 302 DNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKGSITSVQAVYVPAD 361
Query: 614 DLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQ 435
DLTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A VQ
Sbjct: 362 DLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQ 421
Query: 434 KILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLE 255
++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF VAEVFTG G+LV L+
Sbjct: 422 QMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLK 481
Query: 254 ETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKAETLAK 135
+TI+ F +IL G +D LPE AFYMVG I++ V KAE +A+
Sbjct: 482 DTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 67.7 bits (158), Expect = 2e-12
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Frame = -1
Query: 779 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLT 606
+ A EVSA +P GY + TD+ T+ ER + GSIT + + +P DD+T
Sbjct: 281 YADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDIT 340
Query: 605 DPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGV 438
P P T + + R + IYP ++ L S SR+M I +H +V+ +
Sbjct: 341 HPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQL 400
Query: 437 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 312
+ + + +++G + LS+ED+L + K ++ F+SQ
Sbjct: 401 YAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 56.4 bits (130), Expect = 4e-09
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Frame = -1
Query: 794 DXIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-------TTTKKGSITSVQ 636
D R+ +A E+S L +P+ GY L + + ER + ++G+++ V
Sbjct: 357 DSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVG 416
Query: 635 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH- 459
A+ P D +DP + T + L + +A+ +P+++ S S+ ++ E
Sbjct: 417 AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEER 476
Query: 458 ---YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 312
+N R +++I+Q S+ +II ++G LSE DK+T+ A I+ FL Q
Sbjct: 477 VPGFNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 33.1 bits (72), Expect = 0.047
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Frame = -1
Query: 794 DXIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIY 627
D + + A ++S LL R P Y + + ER GS+T++ I
Sbjct: 297 DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSPKHGGGSLTALPVIE 356
Query: 626 VPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVA 447
D++ P + D L + GI PA++ S SR+ + A VA
Sbjct: 357 TQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAAQVKAMK-QVA 415
Query: 446 RGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 309
++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 416 GQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.33
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 641 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 468
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 467 AEHYNVARGVQKILQDYKSL 408
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 1.0
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -1
Query: 683 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 561
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 531 TQFSNGSRKYSGSIQVSKSGGWSRISQVISWYINSLHRCDGTFLGG 668
TQ SR S + S + ++WY++SLHR G + G
Sbjct: 43 TQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAG 88
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 510 RIHSWVDTQFSNGSRKYSGSIQVSK 584
R+ S DT F N KY ++Q+SK
Sbjct: 1331 RVESSSDTVFENTDLKYDNNVQMSK 1355
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 665 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 528
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 256 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 381
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 9.4
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3
Query: 609 QVISWYINSLHRCDG 653
+ +SW++N+LH C G
Sbjct: 265 EFLSWFLNTLHNCLG 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,553
Number of Sequences: 5004
Number of extensions: 69749
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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