Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P15
         (363 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   1.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   1.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   5.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   6.8  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    20   6.8  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    20   9.0  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 211 PLAANVGKRSHSIQI*ANFYAIENSKTRTKYTGRP 107
           P  A+ GKR+ +    +    +E    R+KY  RP
Sbjct: 79  PKGASNGKRARTAYTSSQLVELEREFHRSKYLCRP 113


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 211 PLAANVGKRSHSIQI*ANFYAIENSKTRTKYTGRP 107
           P  A+ GKR+ +    +    +E    R+KY  RP
Sbjct: 99  PKGASNGKRARTAYTSSQLVELEREFHRSKYLCRP 133


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 199 NVGKRSHSIQI*ANFYAIENSKTRTKYTGRPS 104
           N+GK        AN YA + +   + Y+G P+
Sbjct: 291 NIGKAQEE----ANLYAAKKAAGASPYSGTPT 318


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 238 PILYAVGTAPLAANVGKRSHSIQI 167
           P+L +  + P++ +  +R HSI +
Sbjct: 218 PVLASYKSVPMSFSSPRRRHSINL 241


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 6   IFKKYSCYTIFEPL 47
           I   +SCYT+  P+
Sbjct: 72  IVNAFSCYTVLAPV 85


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 282 AHSTIHYCNYL 314
           ++ST+H+ NY+
Sbjct: 209 SYSTLHFVNYI 219


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,278
Number of Sequences: 336
Number of extensions: 1137
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)