Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P15
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF025469-1|AAG00030.3|  578|Caenorhabditis elegans Hypothetical ...    27   5.3  

>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 147 SRTQKLALSTLVGLVCTKXCGCNEIA 70
           SRT + A++T VGL+ T  C  N IA
Sbjct: 60  SRTTRAAVTTSVGLIFTYFCYGNAIA 85


>AF025469-1|AAG00030.3|  578|Caenorhabditis elegans Hypothetical
           protein W09B6.3 protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 200 KRRQTIAFHTNMS*LLRYRELK 135
           +R  T+AFH N S ++RY  LK
Sbjct: 144 ERNITVAFHPNCSPVIRYETLK 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,849,644
Number of Sequences: 27780
Number of extensions: 114582
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)