Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P14
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   174   1e-44
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   174   1e-44
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    40   4e-04
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    30   0.36 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   3.3  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    26   4.4  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   4.4  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    26   5.8  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  174 bits (423), Expect = 1e-44
 Identities = 75/111 (67%), Positives = 98/111 (88%)
 Frame = -2

Query: 521 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 342
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++A
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62

Query: 341 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNXQGRNEG 189
           TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN +G  +G
Sbjct: 63  TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKG 113



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -3

Query: 205 KGEMKGSAITGPVAKECADLWPR 137
           KGEMKGSAITGPVAKECADLWPR
Sbjct: 108 KGEMKGSAITGPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  174 bits (423), Expect = 1e-44
 Identities = 75/111 (67%), Positives = 98/111 (88%)
 Frame = -2

Query: 521 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 342
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++A
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62

Query: 341 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNXQGRNEG 189
           TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN +G  +G
Sbjct: 63  TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKG 113



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -3

Query: 205 KGEMKGSAITGPVAKECADLWPR 137
           KGEMKGSAITGPVAKECADLWPR
Sbjct: 108 KGEMKGSAITGPVAKECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
 Frame = -2

Query: 368 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 216
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 215 VNXQ 204
           VN +
Sbjct: 91  VNKE 94


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +1

Query: 217  MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 396
            +  ALSS+Y    S L        +T  +T   SS     T +++ +P P    + R P 
Sbjct: 777  LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836

Query: 397  IPWTAITYRFFAPVLSAQLITAPTGRP 477
             P +A      A  +++ LI +P   P
Sbjct: 837  TPLSA-ALGSAAQSITSPLIMSPAAIP 862


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
 Frame = -2

Query: 350 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNXQGRNEGLGHHRA 171
           IV    KGK  L   + P++ I       R  G  +Y ED  GV      R   L +  +
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV-----QRYISLDNRAS 363

Query: 170 CS-QRMC*SVAAYCLKRELYRLNIRLRLVAAFYF 72
            S  + C SV  Y L    Y +     L A F F
Sbjct: 364 NSLVKWCLSVIRYVLPLREYEIFYTGHLYALFAF 397


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = -2

Query: 539 YNKMSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGS 360
           YNK+ K+    +      ++ G    AVI      G KN+  ++V   +  L R      
Sbjct: 96  YNKLPKKSTDTAVILDPVMATGGTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPG 155

Query: 359 GDMIVATVKK 330
            + ++  V K
Sbjct: 156 VEFVIGAVDK 165


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -2

Query: 335 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 225
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +3

Query: 135 IRGHRSAHSLATGPVMAEPFISPLXIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYLFP 314
           +R  R  + ++   ++  P    L   Y  + +++   Y +  S+  PL DDHC+++ + 
Sbjct: 89  LRHFRHENIISILDILPPPSYQELEDVYIVQELMETDLYRVIRSQ--PLSDDHCQYFTYQ 146

Query: 315 EFR 323
             R
Sbjct: 147 ILR 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,024
Number of Sequences: 5004
Number of extensions: 58009
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)