Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P14
         (684 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.9  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   5.1  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   9.0  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 430 APVLSAQLITAPTGRPRE--IRNFAPAEP 510
           APV+ + ++TAP  RP +     FAP EP
Sbjct: 91  APVVPSSVVTAPPARPSQPPTTRFAP-EP 118


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 150 SAHSLATGPVMAEPFISPLXIDYDTRIVLKVYKYS 254
           +   +A   V+   F SP  + Y+T  VLK Y YS
Sbjct: 162 TGRGIAGESVIDVTFASPSIVRYNTWEVLKSYWYS 196


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 523 REDVVVPRERNSVSPWVSQWE 461
           RED+     +N++  W  +W+
Sbjct: 922 REDIRATERQNTIDCWQEEWD 942


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,481
Number of Sequences: 2352
Number of extensions: 15834
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)