Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_P14
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 195 3e-50
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 5.4
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 7.1
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical pr... 27 9.4
X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein ( C.ele... 27 9.4
X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determinati... 27 9.4
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 195 bits (475), Expect = 3e-50
Identities = 91/114 (79%), Positives = 103/114 (90%)
Frame = -2
Query: 530 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 351
MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60
Query: 350 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNXQGRNEG 189
V +VKKGKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVN +G +G
Sbjct: 61 FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKG 114
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -3
Query: 205 KGEMKGSAITGPVAKECADLWPR 137
KGEMKGSAITGPVAKECADLWPR
Sbjct: 109 KGEMKGSAITGPVAKECADLWPR 131
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 325 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 501
+PF+ T + P A ++ R P+ P+ T AP + PT PR I P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188
Query: 502 AEPPRPLLDILLYQNFE 552
+P RP+ I Q F+
Sbjct: 189 QQPFRPIQPIQPQQPFQ 205
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 80 TQLLILNVYSSDRARV*GNTRPQISTFFGYRPCDGRALHF 199
T LL ++ S RAR+ P + F YRPC R L +
Sbjct: 80 TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPY 119
>AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical
protein Y66D12A.5 protein.
Length = 729
Score = 28.3 bits (60), Expect = 5.4
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = -2
Query: 479 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 312
L L G V C +D KN + + G + G+LNR M+ +T K +L
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512
Query: 311 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 228
V P +RK +RD F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 213 DYDTRIVLKVYKYSITPSERFPL 281
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 370 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 462
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 480 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 385
PG P G+ N G CD CP + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
>Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical
protein C01F6.4 protein.
Length = 388
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +1
Query: 400 PWTAITYRFFAPVLSAQLITAPTGRPR--EIRNFAPAEPPRPLLDILLYQNF----ERNN 561
PW + F + S QLITA G R EI F R + I+ Y NF R N
Sbjct: 80 PWDEFSIDRFLEITSIQLITAGAGYERNDEITRFV---FQRTMKTIVTYCNFMYDLARRN 136
Query: 562 RDVKLVTFVVQ 594
V++ F +Q
Sbjct: 137 GKVQITRFELQ 147
>X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein (
C.elegans gene fem-3. ).
Length = 388
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +1
Query: 400 PWTAITYRFFAPVLSAQLITAPTGRPR--EIRNFAPAEPPRPLLDILLYQNF----ERNN 561
PW + F + S QLITA G R EI F R + I+ Y NF R N
Sbjct: 80 PWDEFSIDRFLEITSIQLITAGAGYERNDEITRFV---FQRTMKTIVTYCNFMYDLARRN 136
Query: 562 RDVKLVTFVVQ 594
V++ F +Q
Sbjct: 137 GKVQITRFELQ 147
>X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determination
protein protein.
Length = 388
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +1
Query: 400 PWTAITYRFFAPVLSAQLITAPTGRPR--EIRNFAPAEPPRPLLDILLYQNF----ERNN 561
PW + F + S QLITA G R EI F R + I+ Y NF R N
Sbjct: 80 PWDEFSIDRFLEITSIQLITAGAGYERNDEITRFV---FQRTMKTIVTYCNFMYDLARRN 136
Query: 562 RDVKLVTFVVQ 594
V++ F +Q
Sbjct: 137 GKVQITRFELQ 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,189
Number of Sequences: 27780
Number of extensions: 339329
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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