Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P13
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   3.2  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   3.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   4.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   4.2  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   5.5  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    24   7.3  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.3  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    24   7.3  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.6  
SPBC216.06c |swi1||replication fork protection complex subunit S...    23   9.6  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 210 SRFFQQTVRRYHG--ESHFKPPTMDELPVPKG 121
           +R FQ  + RY    E   KP  ++E+P P G
Sbjct: 267 NRQFQSDIDRYRKDPEGFMKPAELNEIPKPAG 298


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +2

Query: 86  RRWLASWCD--CHEPLGTGNSSMVGG 157
           RRWL       CH  +G GN S  GG
Sbjct: 568 RRWLVRLRQACCHPQVGFGNKSAFGG 593


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 141 HPWWGA*SDFRHGSDALF 194
           +P+W   SDF H S+AL+
Sbjct: 658 YPYWHRNSDFSHISEALY 675


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 146 WMNYQCPKAHGSRT 105
           WM   CPK HG  T
Sbjct: 484 WMKTTCPKCHGPAT 497


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 201 FQQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAV 73
           F+  +R Y+G   +K  T+D+L V   + Q HH  +  ++  V
Sbjct: 829 FEDYLRFYYGNKAYKIYTIDKL-VWSAAKQVHHIVSDGKYKFV 870


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 214 NLACYEHFYCSALC 255
           +LACYE F   ALC
Sbjct: 666 SLACYEFFLALALC 679


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 157 LEVTFAMVATHCLLEEPRCNLACYEHFYCSALCVVSFIHFVSRSTH 294
           LE+ F+   T   +    C   C++H  CS+      + + S+ TH
Sbjct: 6   LEIGFSKALTE--VAPVTCQCECWDHNLCSSQASEMDLIYQSQDTH 49


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 203 SSNKQCVATMAKVTSSPPPWMNYQCP 126
           SS+    +T +    + PPW+NY  P
Sbjct: 140 SSSSAVSSTSSSFDRTSPPWLNYVEP 165


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 185 VATMAKVTSSPPPWMNYQCPKAHGSRTMMP 96
           + +  K  +SP PW N Q   + G     P
Sbjct: 147 IESRKKRKNSPDPWANLQTKPSFGETVQAP 176


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 172 AMVATHCLLEEPRCNLACYEHFYCSALCVVSFIHFV 279
           +++  +  +E+   +   YE  YC   C+ SF+ F+
Sbjct: 543 SLINANAAVEDRLFDFGRYESRYCDNGCIDSFVLFL 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,102
Number of Sequences: 5004
Number of extensions: 24052
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)