Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P07
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.7  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.7  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.3  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 480 SWTNKLLHNYNNN 442
           S +NK +HN NNN
Sbjct: 84  SLSNKTIHNNNNN 96


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 480 SWTNKLLHNYNNN 442
           S +NK +HN NNN
Sbjct: 84  SLSNKTIHNNNNN 96


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 480 SWTNKLLHNYNNN 442
           S +NK +HN NNN
Sbjct: 84  SLSNKTIHNNNNN 96


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 480 SWTNKLLHNYNNN 442
           S +NK +HN NNN
Sbjct: 84  SLSNKTIHNNNNN 96


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 243 CTVEFTRWKFDQ*VI*IRKSSFKFN 169
           CT++ T + FDQ    ++  S+ FN
Sbjct: 151 CTIDVTYFPFDQQTCIMKFGSWTFN 175


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 480 SWTNKLLHNYNNN 442
           S +NK +HN NNN
Sbjct: 317 SLSNKTIHNNNNN 329


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 171 NNIGKSNVRNRTPRRNVYSDII 106
           N  GK + +   PRR++YS ++
Sbjct: 365 NCCGKWSSQKSEPRRSIYSSLL 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,499
Number of Sequences: 438
Number of extensions: 3695
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)