Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P06
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    56   1e-09
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   2.4  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    25   2.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   4.3  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    23   7.5  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    23   7.5  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    23   9.9  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 26/53 (49%), Positives = 34/53 (64%)
 Frame = -1

Query: 235 MAKSKNHTNHNQNRKAHRNGIKKXKEDQARIHPWHGSKIFKESKVLQEG*PEA 77
           MAKSKNHTNHNQN+KAHRNGIK+ ++ +     +  +K  +  K    G  EA
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 273 LSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSXRKT 154
           L S +   EN++K +     Q+   T   TEMVS + +K+
Sbjct: 135 LESRNNRDENSAKREKNNSHQVEADTNNATEMVSSNAKKS 174


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 7   NVHFLAFASRGSFSLSRPRELLGWLQVTLL 96
           N H L  A+ G  S S+ + L  WLQ+ ++
Sbjct: 172 NAHSLRHANHGVQSYSKSKRLSFWLQLGMI 201


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 10   VHFLAFASRGSFSLSRPRELLGWL 81
            V+ LAF   G  S+S P  + GWL
Sbjct: 1010 VYALAFLFTGISSMSLPYHIRGWL 1033


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 238 KMAKSKNHT-NHNQNRKAHRNGIKKXKEDQAR 146
           K   SK H  N+N+NR+ H +      E + R
Sbjct: 200 KSLNSKRHVDNYNENRRRHYDSYSSYDELERR 231


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 204 TKTAKLTEMVSKSXRKTRHESTLGMDPKFLRNQ 106
           TKT   T+ +  S       + +  DP +L+NQ
Sbjct: 447 TKTLATTKEIQNSPTLVESSTVVHHDPSYLQNQ 479


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 202 QNRKAHRNGIKKXKEDQARIHPWHG 128
           Q ++   NGI+  +  + RI PW G
Sbjct: 199 QYKEIPLNGIEGYESQKQRIKPWSG 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,730
Number of Sequences: 5004
Number of extensions: 19307
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)