Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_P06
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0661 - 16726958-16726966,16727133-16727234 47 2e-06
01_02_0115 - 11248021-11248101,11249017-11249118 47 2e-06
12_01_0645 - 5468344-5470266 29 0.92
08_01_0349 - 3082700-3083407 28 1.6
06_03_0336 + 19671500-19672150,19672681-19673301 27 2.1
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 27 2.8
10_08_0419 - 17783202-17784938 27 3.7
08_02_0588 + 19036509-19039235 27 3.7
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917... 27 3.7
11_06_0526 - 24585161-24587119 26 6.5
04_01_0403 + 5283830-5284106,5284996-5285179,5285801-5286015,528... 26 6.5
03_02_0614 + 9863622-9863675,9864353-9864604,9865125-9865268,986... 26 6.5
01_06_0937 + 33175966-33178020 26 6.5
08_01_0350 - 3087631-3088461 25 8.6
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 25 8.6
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1
Query: 235 MAKSKNHTNHNQNRKAHRNGIKKXK 161
MAKSKNHT HNQ+ KAH+NGIKK K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPK 25
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1
Query: 235 MAKSKNHTNHNQNRKAHRNGIKKXK 161
MAKSKNHT HNQ+ KAH+NGIKK K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPK 25
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -2
Query: 171 KSXRKTRHESTLGMDPKFLRNQRFCKKGNLK 79
K ++ R ST GMDPKFLRNQR+ +K N K
Sbjct: 22 KKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
>12_01_0645 - 5468344-5470266
Length = 640
Score = 28.7 bits (61), Expect = 0.92
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -2
Query: 297 IRPADASVLSSESKWIENASKWQSQ-RIIQIITKTAKLTEMVSKSXRKTRHESTLGMDPK 121
I A +L + W EN +W+ +++ I K+ T ES G + +
Sbjct: 297 INSTKAFLLVLDDVWEENLHEWEKLFSVLRGINTRIKILLTTRTQSVATLVESVTGCEDQ 356
Query: 120 FLRNQRFCKKGNLKPAKQLARA 55
LR + GNL+ QLA A
Sbjct: 357 HLRLHELEENGNLQIFCQLALA 378
>08_01_0349 - 3082700-3083407
Length = 235
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 146 SCLVFLXLFDTISVSFAVLVMICMIL*LCHFDAFSIHLDSED 271
SC VFL LF I + A L M+C + L + + D ED
Sbjct: 180 SCPVFLWLFGPIPMFAACLAMVCALYFLDVYTEWDKADDEED 221
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 136 WHGSKIFKESKVLQEG*PEASQATREGG 53
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -2
Query: 258 KWIENASKWQSQRIIQIITKTAKLTEMVSKSXRKTRHESTLGMDPKFLRNQRFCKKGN 85
KWI+ W++ +I + + KT +T + + R + + LG +L F + G+
Sbjct: 187 KWIQEEKAWENSKINEELMKT--VTSKIKEDDRILKRFNRLGKSELYLDLLYFLRFGS 242
>10_08_0419 - 17783202-17784938
Length = 578
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 177 VSKSXRKTRHESTLGMDPKFLRN----QRFCKKGNLKPAKQLARAAER 46
V K+ + S +G++P L Q FC KGN+K A ++ E+
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 64 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 156
ELLGW QV A ++P + + A F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453
>01_05_0749 +
24890944-24891146,24891414-24891535,24891633-24891721,
24891813-24891848,24892268-24892367,24892524-24892566,
24892645-24892739,24892978-24893036,24893114-24893613,
24893691-24893772,24893864-24894429,24894520-24894655,
24894750-24894812,24894942-24895172,24895282-24895395
Length = 812
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -1
Query: 217 HTNHNQNRKAHRNGIKKXKEDQARIHPWHGSKIFKESKVLQEG*PEASQATREGG*EKSY 38
H +N+N K +RNG + HG +IF+ES L + EA T + Y
Sbjct: 396 HLMNNKNPK-YRNGNLVISSESLS----HGLRIFQESNDLGKDTVEAKDETEMVVPDNEY 450
Query: 37 XEKQRP 20
+K RP
Sbjct: 451 EKKIRP 456
>11_06_0526 - 24585161-24587119
Length = 652
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 187 HRNGIKKXKEDQARIHPWHGSKIFKESKVLQ 95
H N KED AR+H W F +K L+
Sbjct: 379 HFNSDYYLKEDTARVHSWRFIGNFTNAKTLK 409
>04_01_0403 +
5283830-5284106,5284996-5285179,5285801-5286015,
5286616-5286736,5286862-5286974,5287823-5288055,
5288717-5288832,5288949-5289047,5289512-5289691,
5289816-5289903,5289999-5290208,5290599-5290820
Length = 685
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 28 ASRGSFSLSRPRELLGWLQVTLLA 99
AS F +R E LGW +V LLA
Sbjct: 479 ASANIFEANRAAERLGWARVALLA 502
>03_02_0614 +
9863622-9863675,9864353-9864604,9865125-9865268,
9865350-9866024,9866117-9866317,9866446-9866646
Length = 508
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 302 NEFGRPMLLFCPLNLSGLKTHQNG 231
N+ +P+ FCP +L G K H G
Sbjct: 212 NDMNQPVDTFCPKHLMGGKVHITG 235
>01_06_0937 + 33175966-33178020
Length = 684
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 123 KFLRNQRFCKKGNLKPAKQLARAAERKAT 37
K +RN C++G A ++ RAAER T
Sbjct: 83 KLIRN--LCRRGRTSDAARVLRAAERSGT 109
>08_01_0350 - 3087631-3088461
Length = 276
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 146 SCLVFLXLFDTISVSFAVLVMICMI 220
SC VFL LF I + + L M+C +
Sbjct: 200 SCPVFLWLFGPIPMFASCLAMVCAL 224
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
Frame = +3
Query: 90 PSCKT------FDSLKILDPCQGWI 146
P+C+T F+S+K+L PC+ W+
Sbjct: 1448 PNCRTEKLYSYFESIKLLFPCEQWM 1472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,717,526
Number of Sequences: 37544
Number of extensions: 129442
Number of successful extensions: 421
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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