Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P06
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.089
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   7.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   7.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   7.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   7.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 0.089
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 229 KSKNHTNHNQNRKAHRNGIKKXKEDQARIHPWHGSK 122
           +  NH NHN N+  H +       +Q      H SK
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSK 455


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 228  SQRIIQIITKTAKLTEMVSKSXRKTRHESTLG 133
            S+R++ ++T+   LTE      R   HE+  G
Sbjct: 1124 SRRVLIVLTRNFLLTEWSRFEFRAALHEALRG 1155


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 174 SKSXRKTRHESTLGMDPKFL 115
           S +  + RH STL +D K L
Sbjct: 234 SHTTDENRHSSTLDIDHKML 253


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 226 SKNHTNHNQNRKAHRN 179
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 226 SKNHTNHNQNRKAHRN 179
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  QLARAAERKATXRSKGQ 19
           +L RA E+K + RSK +
Sbjct: 64  ELRRAREKKLSKRSKSR 80


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  QLARAAERKATXRSKGQ 19
           +L RA E+K + RSK +
Sbjct: 64  ELRRAREKKLSKRSKSR 80


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  QLARAAERKATXRSKGQ 19
           +L RA E+K + RSK +
Sbjct: 64  ELRRAREKKLSKRSKSR 80


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  QLARAAERKATXRSKGQ 19
           +L RA E+K + RSK +
Sbjct: 64  ELRRAREKKLSKRSKSR 80


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  QLARAAERKATXRSKGQ 19
           +L RA E+K + RSK +
Sbjct: 64  ELRRAREKKLSKRSKSR 80


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  QLARAAERKATXRSKGQ 19
           +L RA E+K + RSK +
Sbjct: 64  ELRRAREKKLSKRSKSR 80


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  QLARAAERKATXRSKGQ 19
           +L RA E+K + RSK +
Sbjct: 64  ELRRAREKKLSKRSKSR 80


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  QLARAAERKATXRSKGQ 19
           +L RA E+K + RSK +
Sbjct: 64  ELRRAREKKLSKRSKSR 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,866
Number of Sequences: 438
Number of extensions: 1444
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)